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The map label for this gene is araC [H]

Identifier: 158422969

GI number: 158422969

Start: 1514113

End: 1515045

Strand: Direct

Name: araC [H]

Synonym: AZC_1345

Alternate gene names: 158422969

Gene position: 1514113-1515045 (Clockwise)

Preceding gene: 158422967

Following gene: 158422973

Centisome position: 28.2

GC content: 63.13

Gene sequence:

>933_bases
ATGGCCAGGCGAGCTGGTGCCCTGCAGATCGAGGAGTCGAACATGGCGGGTGTGCACGAGTTTGGCCGCATCAAATTCCC
GAGGGGCGAGGTGCTGGCGAGTTCCGCGCGGCGGAACTGGACGGGCATGGCCGCCGAGATCCGAAACCATCCGGCCGGGG
AGATTCCGCCTCCTGTTCCGCAGCAGATGGAGGTCACGCTCGCCTTGCGCGGATCGGATGCCGGGCGCGTGGAGCGCCGG
GGAAACGGTGAATTCCAGGATACAGCGGCCCGCGCGGGGACGCTCTGGCTGTGCCCGATCGGCGTGGTCGAGGATTCGAT
CCGCATTACCCAGGATCTCGGCAGCATTCTGCACATGTACATTGGGCATGAGATATTCAGGGATATATCGGCTTCAGTGT
CGCGTGCCGTCTCGCCGGAGACCATCTCCTACCGCGCGGACATCGACGACGACTTCCTGAGGCAGGTGGGCTACCGGATC
AGCGCTGAACTGGAAGAGGAGACGTCGGTCGGCCGCTTCCTGGTGGATAGCCTTGCCCGGTCCATGGCCGCCCATCTCGT
TGCCAAATACGCAGACGCCCCGCTCCCGCACCGGCAGAGCCCGACCGTCGAGCATACCAAGATGCGCCGGGTGATCGACT
ACATAAACGACAATCTGGCGTCCGAGATTTCGCTGTCGGACCTGTCCGACATCGCGTGCCTCAGCCACCATCATTTTGCG
CGGGCGTTTCGATCGGCCGTGGGTGTCCCTCCGCATCGGTTCATCAGCTCACTTCGGTTGCAGCGCGCCCAAGAGATGCT
CGCTCACACGCAATCAAGCTTGACGGAAATTGCTTATTCTTGTCGGTTTTCGTCCCAGTCCACCTTCACCCGGGCCTTCC
GGCGCCACGTTGGTATGTCGCCCGGCGAATATCGGCGGAAGGCGGCCGGCTAG

Upstream 100 bases:

>100_bases
GAGTGTGCCCCGTACCGCCGGGCGGCGTCTTTGCCCGGACTGGCATTGTCTTTGCCTGAATTGACATCCTTGCCCGGCGA
AGTCTCAGGCCCCACAATGA

Downstream 100 bases:

>100_bases
AACGGCAGCGCTCTCGGCATTGAAAAAGGGGCGGCGGACCACCGGGGGGAAATGATCCGCCGCCCGCCGGCCTCAGCCCT
TCACGAAGGCGAGGAGGTCC

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MARRAGALQIEESNMAGVHEFGRIKFPRGEVLASSARRNWTGMAAEIRNHPAGEIPPPVPQQMEVTLALRGSDAGRVERR
GNGEFQDTAARAGTLWLCPIGVVEDSIRITQDLGSILHMYIGHEIFRDISASVSRAVSPETISYRADIDDDFLRQVGYRI
SAELEEETSVGRFLVDSLARSMAAHLVAKYADAPLPHRQSPTVEHTKMRRVIDYINDNLASEISLSDLSDIACLSHHHFA
RAFRSAVGVPPHRFISSLRLQRAQEMLAHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMSPGEYRRKAAG

Sequences:

>Translated_310_residues
MARRAGALQIEESNMAGVHEFGRIKFPRGEVLASSARRNWTGMAAEIRNHPAGEIPPPVPQQMEVTLALRGSDAGRVERR
GNGEFQDTAARAGTLWLCPIGVVEDSIRITQDLGSILHMYIGHEIFRDISASVSRAVSPETISYRADIDDDFLRQVGYRI
SAELEEETSVGRFLVDSLARSMAAHLVAKYADAPLPHRQSPTVEHTKMRRVIDYINDNLASEISLSDLSDIACLSHHHFA
RAFRSAVGVPPHRFISSLRLQRAQEMLAHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMSPGEYRRKAAG
>Mature_309_residues
ARRAGALQIEESNMAGVHEFGRIKFPRGEVLASSARRNWTGMAAEIRNHPAGEIPPPVPQQMEVTLALRGSDAGRVERRG
NGEFQDTAARAGTLWLCPIGVVEDSIRITQDLGSILHMYIGHEIFRDISASVSRAVSPETISYRADIDDDFLRQVGYRIS
AELEEETSVGRFLVDSLARSMAAHLVAKYADAPLPHRQSPTVEHTKMRRVIDYINDNLASEISLSDLSDIACLSHHHFAR
AFRSAVGVPPHRFISSLRLQRAQEMLAHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMSPGEYRRKAAG

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=105, Percent_Identity=30.4761904761905, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34466; Mature: 34335

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRAGALQIEESNMAGVHEFGRIKFPRGEVLASSARRNWTGMAAEIRNHPAGEIPPPVP
CCCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
QQMEVTLALRGSDAGRVERRGNGEFQDTAARAGTLWLCPIGVVEDSIRITQDLGSILHMY
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
IGHEIFRDISASVSRAVSPETISYRADIDDDFLRQVGYRISAELEEETSVGRFLVDSLAR
HHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHH
SMAAHLVAKYADAPLPHRQSPTVEHTKMRRVIDYINDNLASEISLSDLSDIACLSHHHFA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RAFRSAVGVPPHRFISSLRLQRAQEMLAHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PGEYRRKAAG
CHHHHHHCCC
>Mature Secondary Structure 
ARRAGALQIEESNMAGVHEFGRIKFPRGEVLASSARRNWTGMAAEIRNHPAGEIPPPVP
CCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
QQMEVTLALRGSDAGRVERRGNGEFQDTAARAGTLWLCPIGVVEDSIRITQDLGSILHMY
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
IGHEIFRDISASVSRAVSPETISYRADIDDDFLRQVGYRISAELEEETSVGRFLVDSLAR
HHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHH
SMAAHLVAKYADAPLPHRQSPTVEHTKMRRVIDYINDNLASEISLSDLSDIACLSHHHFA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RAFRSAVGVPPHRFISSLRLQRAQEMLAHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PGEYRRKAAG
CHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA