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The map label for this gene is 158422963

Identifier: 158422963

GI number: 158422963

Start: 1502164

End: 1502814

Strand: Direct

Name: 158422963

Synonym: AZC_1339

Alternate gene names: NA

Gene position: 1502164-1502814 (Clockwise)

Preceding gene: 158422962

Following gene: 158422964

Centisome position: 27.97

GC content: 65.75

Gene sequence:

>651_bases
ATGACGACGACCAGCCAGCCCATCGGAAGGAGGCGTCTGCCTCTCCTCCTGCTGCTCATCGCACTCGCCATCGCGGGTGC
GATTGCCCTGTCTGTCTATGTCTCGAACTTCCTCCTCGGCCGGGAACCGTCGGTGCGAACCAGCGTCGGCGGTCCTTTCC
GGCTGGCCTCGTCCAAGGGCGAGGTGCTGTCCAGCGACGATCTCAAGGGCAAGCCGTTCGCCATCTTCTTCGGCTTCACC
CACTGTCCAGATGTCTGCCCGACCACGCTCTGGGACATGTCCCAGTCCCTGGAACGTCTGAGGACCGGGGGGCTCGGCCT
GCCTGTGCTGTTCGTCTCGCTCGACCCGGAACGCGACACGCCACAGGTGCTCGCGAGCTATATCGACGCCTTCGATACCC
AGATCGTGGGTCTGTCCGGAACGTCGGAGGAGATCGCCAGACTGGCGCGCGCCTACCGGGTCTACTGGAAGCGCGTGCCG
GGGAAGGACGGCGATTACACGCTCGACCACACCGCGACGGTCTATCTGATGGACGCGCGCGGGCAGTTTGCGGGAACCAT
CGGCTATGGCGAGGACGCCTCCTCGCGGGACGCCAAGCTGAGGCGCCTCATCGCTGGCGAGCCCTCCGCAGTAGGGCACT
CCGGCTCCTGA

Upstream 100 bases:

>100_bases
TGGCTCACGGAGCCCTAACGGCCCATGAGGCCCCGCAGGGCGCCACGATCACATCCGCCCCTGCGCGCATCGCGCCTTCG
CTCTCCGGCGTGGTGACGCC

Downstream 100 bases:

>100_bases
GGCCTTCGCCGCCGCACACAGGACCGCCTCATCCCACAAAGGGGGAGGCGGTCCACCTGCCACGTCTCGACGGATCACGT
TCCAATGCCGATGACCTTGC

Product: electron transport SCO1/SenC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTTTSQPIGRRRLPLLLLLIALAIAGAIALSVYVSNFLLGREPSVRTSVGGPFRLASSKGEVLSSDDLKGKPFAIFFGFT
HCPDVCPTTLWDMSQSLERLRTGGLGLPVLFVSLDPERDTPQVLASYIDAFDTQIVGLSGTSEEIARLARAYRVYWKRVP
GKDGDYTLDHTATVYLMDARGQFAGTIGYGEDASSRDAKLRRLIAGEPSAVGHSGS

Sequences:

>Translated_216_residues
MTTTSQPIGRRRLPLLLLLIALAIAGAIALSVYVSNFLLGREPSVRTSVGGPFRLASSKGEVLSSDDLKGKPFAIFFGFT
HCPDVCPTTLWDMSQSLERLRTGGLGLPVLFVSLDPERDTPQVLASYIDAFDTQIVGLSGTSEEIARLARAYRVYWKRVP
GKDGDYTLDHTATVYLMDARGQFAGTIGYGEDASSRDAKLRRLIAGEPSAVGHSGS
>Mature_215_residues
TTTSQPIGRRRLPLLLLLIALAIAGAIALSVYVSNFLLGREPSVRTSVGGPFRLASSKGEVLSSDDLKGKPFAIFFGFTH
CPDVCPTTLWDMSQSLERLRTGGLGLPVLFVSLDPERDTPQVLASYIDAFDTQIVGLSGTSEEIARLARAYRVYWKRVPG
KDGDYTLDHTATVYLMDARGQFAGTIGYGEDASSRDAKLRRLIAGEPSAVGHSGS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=160, Percent_Identity=43.125, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI281182727, Length=160, Percent_Identity=33.75, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI281182722, Length=160, Percent_Identity=33.75, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI281182716, Length=160, Percent_Identity=33.75, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI153791313, Length=160, Percent_Identity=33.75, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17531419, Length=155, Percent_Identity=32.258064516129, Blast_Score=113, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6319498, Length=163, Percent_Identity=36.1963190184049, Blast_Score=119, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6319511, Length=153, Percent_Identity=39.8692810457516, Blast_Score=117, Evalue=2e-27,
Organism=Drosophila melanogaster, GI19920710, Length=150, Percent_Identity=38, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23296; Mature: 23165

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTSQPIGRRRLPLLLLLIALAIAGAIALSVYVSNFLLGREPSVRTSVGGPFRLASSKG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
EVLSSDDLKGKPFAIFFGFTHCPDVCPTTLWDMSQSLERLRTGGLGLPVLFVSLDPERDT
CEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PQVLASYIDAFDTQIVGLSGTSEEIARLARAYRVYWKRVPGKDGDYTLDHTATVYLMDAR
HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECC
GQFAGTIGYGEDASSRDAKLRRLIAGEPSAVGHSGS
CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TTTSQPIGRRRLPLLLLLIALAIAGAIALSVYVSNFLLGREPSVRTSVGGPFRLASSKG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
EVLSSDDLKGKPFAIFFGFTHCPDVCPTTLWDMSQSLERLRTGGLGLPVLFVSLDPERDT
CEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PQVLASYIDAFDTQIVGLSGTSEEIARLARAYRVYWKRVPGKDGDYTLDHTATVYLMDAR
HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECC
GQFAGTIGYGEDASSRDAKLRRLIAGEPSAVGHSGS
CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA