| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is yvrD [H]
Identifier: 158422921
GI number: 158422921
Start: 1445945
End: 1446733
Strand: Direct
Name: yvrD [H]
Synonym: AZC_1297
Alternate gene names: 158422921
Gene position: 1445945-1446733 (Clockwise)
Preceding gene: 158422920
Following gene: 158422925
Centisome position: 26.93
GC content: 66.67
Gene sequence:
>789_bases ATGACCATCAAAGTCGATCCGACCGAGTTCGCGGAAAAGCGCGTGCTCATCAGCGGCGGCACCAGGGGGCTGGGCCGCGC CACCGTCGACCGTTTCCTCGCCGGCGGCGCCCGGGTGATCACATCAGCCCGCGGAACACTGGAGCGGATCGACGGCGTCG AGTATGTCCAGGCCGACCTCACTACGGCGGAGGGCGGGACAGCCTTCGCGAAGGCGGCGCTCGAGCGCCTGGGCGGCGTC GACATCCTGGCCCATGTGCTCGGCGGCTCCTCCGCGCCCGGAGGTGGCTTTGTCGCCCTGACCGACGATCATTGGCTGTC CGAACTGAACCTGAACCTGCTGGCGACCGTGCGTCTGGATCGTCTTCTCGTGCCGCAAATGATCGAGAGGGGCGCCGGCG CGGTGGTGTACGTGACCTCCATCCAATCCGTCCTGCCGCTTCCCGAGGCGACCACCGCTTACGCCGCTGCCAAGGCCGCG CTCAGGACGTATAGCAAGTCCATCTCCAAGGAACTGGGACCGAAGGGCGTGCGGGTCAACGCCGTGTCTCCCGGCTGGAT CATGACCGAGGGGACCGATGTCTTTCTCAAGCGCATCCAAGCCGCGAACGGCGGCACGATCGAGGACGCGCGCCAGCTCG TGCTGGCCGGTCTTGGCGGCATTTCCATAGGTCGCGGCGCTGAACCTCATGAGGTTGCCGACCTCATCGCCTACCTGGCC TCTGATCGCGCTGCCTCGATCCACGGCGCCGAGTTTGTTATCGACGGCGGCACGGTCCCCACCGTCTGA
Upstream 100 bases:
>100_bases TGGAAGGCCCAGCCCATGGCGACTTTAAGGGCAGCCCGATCCGCTTCACCTATCGTTTTACCCTCGGCAACGACGCGATC AAAGCCGTGGAGATCACGGC
Downstream 100 bases:
>100_bases TCGGGGTGGGGGGCACGCTTGGCCGAACTGGTCAAGCGTGGAAAGACACGCGCCCATGGCCCGATGCACTCGACCTCCGC CCTGTGACTAAGAGCGATGG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTIKVDPTEFAEKRVLISGGTRGLGRATVDRFLAGGARVITSARGTLERIDGVEYVQADLTTAEGGTAFAKAALERLGGV DILAHVLGGSSAPGGGFVALTDDHWLSELNLNLLATVRLDRLLVPQMIERGAGAVVYVTSIQSVLPLPEATTAYAAAKAA LRTYSKSISKELGPKGVRVNAVSPGWIMTEGTDVFLKRIQAANGGTIEDARQLVLAGLGGISIGRGAEPHEVADLIAYLA SDRAASIHGAEFVIDGGTVPTV
Sequences:
>Translated_262_residues MTIKVDPTEFAEKRVLISGGTRGLGRATVDRFLAGGARVITSARGTLERIDGVEYVQADLTTAEGGTAFAKAALERLGGV DILAHVLGGSSAPGGGFVALTDDHWLSELNLNLLATVRLDRLLVPQMIERGAGAVVYVTSIQSVLPLPEATTAYAAAKAA LRTYSKSISKELGPKGVRVNAVSPGWIMTEGTDVFLKRIQAANGGTIEDARQLVLAGLGGISIGRGAEPHEVADLIAYLA SDRAASIHGAEFVIDGGTVPTV >Mature_261_residues TIKVDPTEFAEKRVLISGGTRGLGRATVDRFLAGGARVITSARGTLERIDGVEYVQADLTTAEGGTAFAKAALERLGGVD ILAHVLGGSSAPGGGFVALTDDHWLSELNLNLLATVRLDRLLVPQMIERGAGAVVYVTSIQSVLPLPEATTAYAAAKAAL RTYSKSISKELGPKGVRVNAVSPGWIMTEGTDVFLKRIQAANGGTIEDARQLVLAGLGGISIGRGAEPHEVADLIAYLAS DRAASIHGAEFVIDGGTVPTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=264, Percent_Identity=29.1666666666667, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=29.8039215686275, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI66933014, Length=231, Percent_Identity=30.3030303030303, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723750, Length=265, Percent_Identity=25.2830188679245, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI5031737, Length=257, Percent_Identity=27.2373540856031, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=30.7291666666667, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=30.2564102564103, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI59889578, Length=242, Percent_Identity=26.4462809917355, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=29.7872340425532, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI40254992, Length=261, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=29.0697674418605, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787335, Length=261, Percent_Identity=29.5019157088123, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=28.6274509803922, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=28.2945736434109, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=30.9178743961353, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=29.296875, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI2367175, Length=264, Percent_Identity=27.6515151515151, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787891, Length=254, Percent_Identity=28.740157480315, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=25.1968503937008, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790717, Length=269, Percent_Identity=25.2788104089219, Blast_Score=65, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17563726, Length=271, Percent_Identity=32.4723247232472, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17560676, Length=263, Percent_Identity=31.1787072243346, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=30.9963099630996, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=32.7205882352941, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17559104, Length=280, Percent_Identity=30, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI72000259, Length=273, Percent_Identity=30.03663003663, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=27.4131274131274, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=28.996282527881, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=29.3040293040293, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560150, Length=270, Percent_Identity=29.2592592592593, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17544670, Length=277, Percent_Identity=28.5198555956679, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=29.5880149812734, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=28.7822878228782, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=28.3582089552239, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.8810408921933, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=27.007299270073, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=28.3018867924528, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=26.1194029850746, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI71994604, Length=209, Percent_Identity=28.2296650717703, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=26.8482490272374, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=27.3408239700375, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17555706, Length=266, Percent_Identity=25.9398496240602, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=27.2388059701493, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17560220, Length=273, Percent_Identity=26.3736263736264, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=29.7297297297297, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=28.1746031746032, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=28.3524904214559, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=29.7709923664122, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24644339, Length=264, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=25.0965250965251, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644337, Length=125, Percent_Identity=35.2, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24639444, Length=263, Percent_Identity=26.615969581749, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27157; Mature: 27026
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKVDPTEFAEKRVLISGGTRGLGRATVDRFLAGGARVITSARGTLERIDGVEYVQADL CEEECCHHHHHHCEEEEECCCCCCHHHHHHHHHCCCHHEEHHCCHHHHHHCCHHHHHHHC TTAEGGTAFAKAALERLGGVDILAHVLGGSSAPGGGFVALTDDHWLSELNLNLLATVRLD EECCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCEEEEEHHHH RLLVPQMIERGAGAVVYVTSIQSVLPLPEATTAYAAAKAALRTYSKSISKELGPKGVRVN HHHHHHHHHCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE AVSPGWIMTEGTDVFLKRIQAANGGTIEDARQLVLAGLGGISIGRGAEPHEVADLIAYLA EECCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH SDRAASIHGAEFVIDGGTVPTV CCCCCEECCCEEEECCCCCCCC >Mature Secondary Structure TIKVDPTEFAEKRVLISGGTRGLGRATVDRFLAGGARVITSARGTLERIDGVEYVQADL EEECCHHHHHHCEEEEECCCCCCHHHHHHHHHCCCHHEEHHCCHHHHHHCCHHHHHHHC TTAEGGTAFAKAALERLGGVDILAHVLGGSSAPGGGFVALTDDHWLSELNLNLLATVRLD EECCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCEEEEEHHHH RLLVPQMIERGAGAVVYVTSIQSVLPLPEATTAYAAAKAALRTYSKSISKELGPKGVRVN HHHHHHHHHCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE AVSPGWIMTEGTDVFLKRIQAANGGTIEDARQLVLAGLGGISIGRGAEPHEVADLIAYLA EECCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH SDRAASIHGAEFVIDGGTVPTV CCCCCEECCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]