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The map label for this gene is exbD [H]

Identifier: 158422883

GI number: 158422883

Start: 1409987

End: 1410454

Strand: Direct

Name: exbD [H]

Synonym: AZC_1259

Alternate gene names: 158422883

Gene position: 1409987-1410454 (Clockwise)

Preceding gene: 158422882

Following gene: 158422884

Centisome position: 26.26

GC content: 68.8

Gene sequence:

>468_bases
ATGGCCGCGAAGCTTGATCTCGGCGGGGATGACCTCGTCGAAAACCACGACATCAACGTCACGCCCTTCATCGACGTCAT
TTTGGTGCTGCTCATCATCTTCATGGTGGCGGCGCCGCTCGCGACGGTGGACGTGCCGGTGGACCTGCCGGTGGCCAATG
CCCAGCAGCAGCCGCGGCCGGACAAGCCGCTGTTCCTCACCATCCAGCCGGACCTCAAGCTCTCGGTGGGCGACGAGGCA
GTGCAGCGCGACAGCCTGCCGGCGGCCCTCGACGCCGTGACCCATGGCGACCGCCAGCAGCGCGTGTTCGTGCGCGCCGA
CAAGGCCGTGCCCTATGGCGACGTGATGGAGGTGATGAATCTTCTGCGCTCGGCCGGCTATCTGAAGATCGGTCTCGTCG
GCCTGGACACGGCCGCGGCCGCCACCGCGCCCGCTGGTGCCCCGCCCGCGGCGGGAGCCGCCCAGTGA

Upstream 100 bases:

>100_bases
CCTCTCTGACGCCTCGGCCGAGGTGATGCGCCACCTCTCCCGCGATCTCGATCGCGAGGCCTCGGGGGCCAACCGTCTGC
GCGCTGCGGCGGAGTGAGCC

Downstream 100 bases:

>100_bases
CGGCCACCTACCCGCATCATCACCACGAGCACCACGGGCCGCTGCCGGTGGGGCGCTGGGTGCTGGCCGGCGCCCTGATC
CTCGCGATCCACGGCGGCGC

Product: TonB system transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAAKLDLGGDDLVENHDINVTPFIDVILVLLIIFMVAAPLATVDVPVDLPVANAQQQPRPDKPLFLTIQPDLKLSVGDEA
VQRDSLPAALDAVTHGDRQQRVFVRADKAVPYGDVMEVMNLLRSAGYLKIGLVGLDTAAAATAPAGAPPAAGAAQ

Sequences:

>Translated_155_residues
MAAKLDLGGDDLVENHDINVTPFIDVILVLLIIFMVAAPLATVDVPVDLPVANAQQQPRPDKPLFLTIQPDLKLSVGDEA
VQRDSLPAALDAVTHGDRQQRVFVRADKAVPYGDVMEVMNLLRSAGYLKIGLVGLDTAAAATAPAGAPPAAGAAQ
>Mature_154_residues
AAKLDLGGDDLVENHDINVTPFIDVILVLLIIFMVAAPLATVDVPVDLPVANAQQQPRPDKPLFLTIQPDLKLSVGDEAV
QRDSLPAALDAVTHGDRQQRVFVRADKAVPYGDVMEVMNLLRSAGYLKIGLVGLDTAAAATAPAGAPPAAGAAQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=140, Percent_Identity=55, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16225; Mature: 16094

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKLDLGGDDLVENHDINVTPFIDVILVLLIIFMVAAPLATVDVPVDLPVANAQQQPRP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCC
DKPLFLTIQPDLKLSVGDEAVQRDSLPAALDAVTHGDRQQRVFVRADKAVPYGDVMEVMN
CCCEEEEECCCCEEECCCHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
LLRSAGYLKIGLVGLDTAAAATAPAGAPPAAGAAQ
HHHHCCCEEEEEEECCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAKLDLGGDDLVENHDINVTPFIDVILVLLIIFMVAAPLATVDVPVDLPVANAQQQPRP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCC
DKPLFLTIQPDLKLSVGDEAVQRDSLPAALDAVTHGDRQQRVFVRADKAVPYGDVMEVMN
CCCEEEEECCCCEEECCCHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
LLRSAGYLKIGLVGLDTAAAATAPAGAPPAAGAAQ
HHHHCCCEEEEEEECCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]