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The map label for this gene is stcD [H]

Identifier: 158422800

GI number: 158422800

Start: 1312968

End: 1315028

Strand: Direct

Name: stcD [H]

Synonym: AZC_1176

Alternate gene names: 158422800

Gene position: 1312968-1315028 (Clockwise)

Preceding gene: 158422799

Following gene: 158422801

Centisome position: 24.45

GC content: 68.32

Gene sequence:

>2061_bases
TTGCGCGATTGGAGCCGCCCGATGATCGCCAATGCCGACGCCTTGCTGAAGCCGCTGACCCTGAAGGGCCTCACCATCCG
CAACCGGGTGATGAGCACGAGCCATGCCCCCGGCTATGGCAAGGACGGCAAGCCGCAGGAGCGCTACCAGCTCTATCACG
AGGAGAAGGCCAAGGGCGGCATCGGCCTTACCATGTTCGGCGGCTCCTCCTCCGTCGCGCTCGACAGTCCGGCGGCGCCA
TGGAACCAGGTGTCGGTGGCGGATGACAGTGTCATCCCCTTCTTCCGGTCCTTTTCGGAGCGCGTGCACCGGCATGGCGC
CAAGCTGATGATCCAGCTCACCCACATGGGCCGGCGCACCAAGTGGGACACGGAGAACTGGTTCCCCACCGTCTCCGCTT
CGCCGAGGCGCGAGCCCGCCTCCCGCACCATTCCCAAGGAACTGGAGCCGGAGGAAATCGCCCGCATCATCCAGGATTTC
GCCGCCGCCGCCCGCCGCTGCCGCGAGGGGGGACTCGACGGCTGCGAGGTCTCGGCCGCCCATGGCCATCTCATCGACCA
GTTCTGGTCGCCGGCCGTGAACCATCGCACCGATGGCTATGGCGGGAGCCTGGCCAACCGCATGCGTTTCGGCCGCGAGG
TGCTGGAGGCCATGCGCACCGCGGTGGGCCATGACTATGTGATCGGCATCCGCATGTCCGGCGACGAGATGATGGCCGAT
GGCCTCTCCCATGAGGAGTGCGTGGAGATCGCCGCCACCTACGCCCGCGACGGGCTGGTGGACTTCATCAATGTGCTGGG
CGGGCAGGCGCGGGACGACATGGCCCACGCCATCTCCCTGCCAAACATGTCCTTCCCCGTCGCGCCCTTCCTGCATCTGC
CCAGCGCCATCAAGCGCGAGGTGGAGGTGCCGGTGTTCCACGCCCAGCGCGTCACCGATCTCGCCACCGCCGCCCGCGCG
GTGGCGCAGGGGCATGTGGACATGGTGGCCATGACCCGCGCCCATATCGCCGACCCGCATCTCGTGAAGAAGCTCACCGA
GGGGCGGGAGGACGACATCCGCCAGTGTGTCGGCGCCGGCTATTGCATCGACCGCATCTATGTGGGCGGCGATGCCCTGT
GCATCCAGAACGCCGCCACAGGGCGCGAAGCCACCATGCCCCATGTCATCCCGAAGGCGGACGTGCGTCGCCGCGTGGTG
GTGGTCGGCGCCGGCCCCGGCGGTCTGGAGGCCGCCCGCGTGTGCGCGGAGCGGGGCCATTCCGTGGTGCTGTTCGAGAA
GAACGCGCTCGCCGGCGGCCAGATCAACCTCGCCGCCAGGGCGGGCTGGCGGGAGGCGCTCTCGGGCATTCCGCGCTGGC
TCGCGGGACAGGTCGGCAAGCTTGGCGTGGACCTGCGCCTCGGCACCGAGGCCAGCGCGGAGGCCATTCTGGCCGAGCGG
CCGGACGTGGTGATCATCGCCACCGGCGGTGCGCCGAGCCACGGCCACGCCAAGGGTGCCGAGCGGGCGCTCACCACGGC
GGATGTCCTGGCAGGCCGTGTGGAGCTTTCCGGCTCCGTGCTGCTGTTCGACGAGATGGGCCAGCACAATGCCGCCTCCA
CCGCCGAGCAGATGGCCAAGCGCGGCTGCCTTGTGGAATTCGTCACCGCCGATCGCTATGCGGCGCAGGAGGTGGGCACC
ACCAACCAGCCCATCCACTATCGCGAGCTCTACAAGCTCGGGGTGATCTTCTCCCCCAATCTCGATCTCATCGAGATCTA
TCCCGAGGGCAACCGTCTGGTGGCCGCCCTGCGTAACACCTTTACCGATCAGGAGGAGGAGCGCGTGGTGGACCATGTGG
TGGTGGACTATGGCACGCTGCCCGTGGACGGCGTCTATCATGCGCTCAAAGCCCGCGCGGTGAATGCGGGGCAGATCGAC
CAGGGCGCCGTCGTGCGCGGCGAGCCGCAGCCCTTCGATCTCTCGCACGGCTTCGCGCTCTACCGGGTGGGGGATGCGCT
GGCCGGGCGCAACATCCACGCCGCGCTCTATGATGCCCTGCGCCTGTGCAAGGACATCTGA

Upstream 100 bases:

>100_bases
CTGCGGCTTCCAGTCCGCCGCGCATTTCTCCGTCGCCTACGGGCGGCGCTTTGGCCATCCGCCCCGCGCGGAGCGCGCCG
CCTGACATTGCCCGACCCGC

Downstream 100 bases:

>100_bases
GCCATGGCCGCCGCCTTCGGCCTCTCGGTGCTGGTCTGGGCCATGGGGCTTTCGGCCGCGCTCGCGCTCGGCACGCGCGT
CGCGCTCTGGCGGCGCGGTC

Product: FMN oxidoreductase

Products: trans-transtetradehydroacyl-CoA; NADPH [C]

Alternate protein names: Stachydrine utilization protein stcD [H]

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MRDWSRPMIANADALLKPLTLKGLTIRNRVMSTSHAPGYGKDGKPQERYQLYHEEKAKGGIGLTMFGGSSSVALDSPAAP
WNQVSVADDSVIPFFRSFSERVHRHGAKLMIQLTHMGRRTKWDTENWFPTVSASPRREPASRTIPKELEPEEIARIIQDF
AAAARRCREGGLDGCEVSAAHGHLIDQFWSPAVNHRTDGYGGSLANRMRFGREVLEAMRTAVGHDYVIGIRMSGDEMMAD
GLSHEECVEIAATYARDGLVDFINVLGGQARDDMAHAISLPNMSFPVAPFLHLPSAIKREVEVPVFHAQRVTDLATAARA
VAQGHVDMVAMTRAHIADPHLVKKLTEGREDDIRQCVGAGYCIDRIYVGGDALCIQNAATGREATMPHVIPKADVRRRVV
VVGAGPGGLEAARVCAERGHSVVLFEKNALAGGQINLAARAGWREALSGIPRWLAGQVGKLGVDLRLGTEASAEAILAER
PDVVIIATGGAPSHGHAKGAERALTTADVLAGRVELSGSVLLFDEMGQHNAASTAEQMAKRGCLVEFVTADRYAAQEVGT
TNQPIHYRELYKLGVIFSPNLDLIEIYPEGNRLVAALRNTFTDQEEERVVDHVVVDYGTLPVDGVYHALKARAVNAGQID
QGAVVRGEPQPFDLSHGFALYRVGDALAGRNIHAALYDALRLCKDI

Sequences:

>Translated_686_residues
MRDWSRPMIANADALLKPLTLKGLTIRNRVMSTSHAPGYGKDGKPQERYQLYHEEKAKGGIGLTMFGGSSSVALDSPAAP
WNQVSVADDSVIPFFRSFSERVHRHGAKLMIQLTHMGRRTKWDTENWFPTVSASPRREPASRTIPKELEPEEIARIIQDF
AAAARRCREGGLDGCEVSAAHGHLIDQFWSPAVNHRTDGYGGSLANRMRFGREVLEAMRTAVGHDYVIGIRMSGDEMMAD
GLSHEECVEIAATYARDGLVDFINVLGGQARDDMAHAISLPNMSFPVAPFLHLPSAIKREVEVPVFHAQRVTDLATAARA
VAQGHVDMVAMTRAHIADPHLVKKLTEGREDDIRQCVGAGYCIDRIYVGGDALCIQNAATGREATMPHVIPKADVRRRVV
VVGAGPGGLEAARVCAERGHSVVLFEKNALAGGQINLAARAGWREALSGIPRWLAGQVGKLGVDLRLGTEASAEAILAER
PDVVIIATGGAPSHGHAKGAERALTTADVLAGRVELSGSVLLFDEMGQHNAASTAEQMAKRGCLVEFVTADRYAAQEVGT
TNQPIHYRELYKLGVIFSPNLDLIEIYPEGNRLVAALRNTFTDQEEERVVDHVVVDYGTLPVDGVYHALKARAVNAGQID
QGAVVRGEPQPFDLSHGFALYRVGDALAGRNIHAALYDALRLCKDI
>Mature_686_residues
MRDWSRPMIANADALLKPLTLKGLTIRNRVMSTSHAPGYGKDGKPQERYQLYHEEKAKGGIGLTMFGGSSSVALDSPAAP
WNQVSVADDSVIPFFRSFSERVHRHGAKLMIQLTHMGRRTKWDTENWFPTVSASPRREPASRTIPKELEPEEIARIIQDF
AAAARRCREGGLDGCEVSAAHGHLIDQFWSPAVNHRTDGYGGSLANRMRFGREVLEAMRTAVGHDYVIGIRMSGDEMMAD
GLSHEECVEIAATYARDGLVDFINVLGGQARDDMAHAISLPNMSFPVAPFLHLPSAIKREVEVPVFHAQRVTDLATAARA
VAQGHVDMVAMTRAHIADPHLVKKLTEGREDDIRQCVGAGYCIDRIYVGGDALCIQNAATGREATMPHVIPKADVRRRVV
VVGAGPGGLEAARVCAERGHSVVLFEKNALAGGQINLAARAGWREALSGIPRWLAGQVGKLGVDLRLGTEASAEAILAER
PDVVIIATGGAPSHGHAKGAERALTTADVLAGRVELSGSVLLFDEMGQHNAASTAEQMAKRGCLVEFVTADRYAAQEVGT
TNQPIHYRELYKLGVIFSPNLDLIEIYPEGNRLVAALRNTFTDQEEERVVDHVVVDYGTLPVDGVYHALKARAVNAGQID
QGAVVRGEPQPFDLSHGFALYRVGDALAGRNIHAALYDALRLCKDI

Specific function: Possible NADH-dependent oxidase, functions as a demethylase that converts N-methylproline to proline [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789463, Length=675, Percent_Identity=29.7777777777778, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1787939, Length=363, Percent_Identity=28.099173553719, Blast_Score=93, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17565138, Length=266, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17559804, Length=269, Percent_Identity=29.368029739777, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17559802, Length=269, Percent_Identity=30.1115241635688, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17564188, Length=269, Percent_Identity=27.5092936802974, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17540738, Length=386, Percent_Identity=24.6113989637306, Blast_Score=97, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI72001454, Length=270, Percent_Identity=28.5185185185185, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17566914, Length=219, Percent_Identity=26.027397260274, Blast_Score=80, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6321973, Length=83, Percent_Identity=42.1686746987952, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6325086, Length=86, Percent_Identity=40.6976744186046, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR013027
- InterPro:   IPR001155 [H]

Pfam domain/function: PF00724 Oxidored_FMN; PF07992 Pyr_redox_2 [H]

EC number: 1.3.1.34 [C]

Molecular weight: Translated: 74408; Mature: 74408

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDWSRPMIANADALLKPLTLKGLTIRNRVMSTSHAPGYGKDGKPQERYQLYHEEKAKGG
CCCCCCCCCCCCHHHHCCCEECCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
IGLTMFGGSSSVALDSPAAPWNQVSVADDSVIPFFRSFSERVHRHGAKLMIQLTHMGRRT
EEEEEECCCCCEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
KWDTENWFPTVSASPRREPASRTIPKELEPEEIARIIQDFAAAARRCREGGLDGCEVSAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
HGHLIDQFWSPAVNHRTDGYGGSLANRMRFGREVLEAMRTAVGHDYVIGIRMSGDEMMAD
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHC
GLSHEECVEIAATYARDGLVDFINVLGGQARDDMAHAISLPNMSFPVAPFLHLPSAIKRE
CCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCHHHHCCHHHHHC
VEVPVFHAQRVTDLATAARAVAQGHVDMVAMTRAHIADPHLVKKLTEGREDDIRQCVGAG
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCC
YCIDRIYVGGDALCIQNAATGREATMPHVIPKADVRRRVVVVGAGPGGLEAARVCAERGH
CEEHEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCC
SVVLFEKNALAGGQINLAARAGWREALSGIPRWLAGQVGKLGVDLRLGTEASAEAILAER
EEEEEECCCCCCCCEEEHHHCCHHHHHHCCHHHHHCCCCCCCEEEEECCCCCHHHHHHCC
PDVVIIATGGAPSHGHAKGAERALTTADVLAGRVELSGSVLLFDEMGQHNAASTAEQMAK
CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHH
RGCLVEFVTADRYAAQEVGTTNQPIHYRELYKLGVIFSPNLDLIEIYPEGNRLVAALRNT
CCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCEEECCCCCEEEEECCCCHHHHHHHHH
FTDQEEERVVDHVVVDYGTLPVDGVYHALKARAVNAGQIDQGAVVRGEPQPFDLSHGFAL
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCEEE
YRVGDALAGRNIHAALYDALRLCKDI
EEHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDWSRPMIANADALLKPLTLKGLTIRNRVMSTSHAPGYGKDGKPQERYQLYHEEKAKGG
CCCCCCCCCCCCHHHHCCCEECCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
IGLTMFGGSSSVALDSPAAPWNQVSVADDSVIPFFRSFSERVHRHGAKLMIQLTHMGRRT
EEEEEECCCCCEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
KWDTENWFPTVSASPRREPASRTIPKELEPEEIARIIQDFAAAARRCREGGLDGCEVSAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
HGHLIDQFWSPAVNHRTDGYGGSLANRMRFGREVLEAMRTAVGHDYVIGIRMSGDEMMAD
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHC
GLSHEECVEIAATYARDGLVDFINVLGGQARDDMAHAISLPNMSFPVAPFLHLPSAIKRE
CCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCHHHHCCHHHHHC
VEVPVFHAQRVTDLATAARAVAQGHVDMVAMTRAHIADPHLVKKLTEGREDDIRQCVGAG
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCC
YCIDRIYVGGDALCIQNAATGREATMPHVIPKADVRRRVVVVGAGPGGLEAARVCAERGH
CEEHEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCC
SVVLFEKNALAGGQINLAARAGWREALSGIPRWLAGQVGKLGVDLRLGTEASAEAILAER
EEEEEECCCCCCCCEEEHHHCCHHHHHHCCHHHHHCCCCCCCEEEEECCCCCHHHHHHCC
PDVVIIATGGAPSHGHAKGAERALTTADVLAGRVELSGSVLLFDEMGQHNAASTAEQMAK
CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHH
RGCLVEFVTADRYAAQEVGTTNQPIHYRELYKLGVIFSPNLDLIEIYPEGNRLVAALRNT
CCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCEEECCCCCEEEEECCCCHHHHHHHHH
FTDQEEERVVDHVVVDYGTLPVDGVYHALKARAVNAGQIDQGAVVRGEPQPFDLSHGFAL
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCEEE
YRVGDALAGRNIHAALYDALRLCKDI
EEHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: FAD. [C]

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: transDidehydroacyl-CoA; NADP+ [C]

Specific reaction: transDidehydroacyl-CoA + NADP+ =trans-transtetradehydroacyl-CoA + NADPH [C]

General reaction: Redox reaction [C]

Inhibitor: Iodoacetic acid; N-Ethyl maleimide [C]

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9758825; 11481431 [H]