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The map label for this gene is sodB [H]

Identifier: 158422764

GI number: 158422764

Start: 1270608

End: 1271342

Strand: Direct

Name: sodB [H]

Synonym: AZC_1140

Alternate gene names: 158422764

Gene position: 1270608-1271342 (Clockwise)

Preceding gene: 158422763

Following gene: 158422766

Centisome position: 23.66

GC content: 66.8

Gene sequence:

>735_bases
ATGGACGCCACGCCCACCGCTTCCTTGCTCAACGCCTCCTTGCCCGCCGCTTCGTCCCGCCCCGCCGTCTCCCGCCGTAC
CGCTCTGGCCCTCGGGGCCGGCGCCATGGCGAGCGTGCTCGCCGCGCCCCATGTCGCCCGCGCCGCCGTGCCCTTCGTGC
TGCCGCCGCTGCCCTATCCCGAGGATGCGCTGGTGCCGACCATCTCGGCCCGCACGGTCGGCCTGCACTATGGCAAGCAT
CACAAGGGTTATTACGACAAGCTGAACGTGCTCGTGCAGGGCAAGCCCTATGCGGACATGACGCTGGCCGAAGTGGTGGT
CTCCGCCCGCAAGGCCAATGACGCGGACGTCTTCAACAATGCCGCTCAGGCCTGGAACCACAATCTCTACTGGGAGAGCT
TCAAGGGCGGCCCCGCGGCGCCGAAGGGCACCTTTGCCCAGCAGGTGGAGAAGGATTTCCAGTCCCTCGTCGGTCTCCAG
CGCAAACTGGTGGAGCAGGGCGACAAGGTGTTCGGCACCGGGTGGGTCTGGCTCGTGCGCGATGGCGACAAGCTCGACAT
CATCGGCATGAAGGACGCCATCAACCCGCTGCCGGACGGCAAGACGGTGCTGCTCGGCATCGACGTGTGGGAGCACGCTT
ATTATCTCGACTATGAGAACCGCCGCACCGCCCATGTGGAGGCGGTGGTGAAGGACCGCGTGAACTGGCAGGTGGTCGGC
GAGCGCTGGGGCTGA

Upstream 100 bases:

>100_bases
GCGCACGTCCGCGCGAGCGGGCGGACCTGCGGCGCGGCTTTGGGGTTATGATCGTCGCAAGGCACGGACGCTTCCGTGCC
GTTCCGCGGAGGATCGCCCC

Downstream 100 bases:

>100_bases
GGCGCGAAACTTCCATCGTTTTCGAGAGATCGACGGCGCGCGGGATGTCCCCGCGCGCCGTCACAGGCCCACGTCGTCGA
GCCGGCGGCCCTTGGTCTCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDATPTASLLNASLPAASSRPAVSRRTALALGAGAMASVLAAPHVARAAVPFVLPPLPYPEDALVPTISARTVGLHYGKH
HKGYYDKLNVLVQGKPYADMTLAEVVVSARKANDADVFNNAAQAWNHNLYWESFKGGPAAPKGTFAQQVEKDFQSLVGLQ
RKLVEQGDKVFGTGWVWLVRDGDKLDIIGMKDAINPLPDGKTVLLGIDVWEHAYYLDYENRRTAHVEAVVKDRVNWQVVG
ERWG

Sequences:

>Translated_244_residues
MDATPTASLLNASLPAASSRPAVSRRTALALGAGAMASVLAAPHVARAAVPFVLPPLPYPEDALVPTISARTVGLHYGKH
HKGYYDKLNVLVQGKPYADMTLAEVVVSARKANDADVFNNAAQAWNHNLYWESFKGGPAAPKGTFAQQVEKDFQSLVGLQ
RKLVEQGDKVFGTGWVWLVRDGDKLDIIGMKDAINPLPDGKTVLLGIDVWEHAYYLDYENRRTAHVEAVVKDRVNWQVVG
ERWG
>Mature_244_residues
MDATPTASLLNASLPAASSRPAVSRRTALALGAGAMASVLAAPHVARAAVPFVLPPLPYPEDALVPTISARTVGLHYGKH
HKGYYDKLNVLVQGKPYADMTLAEVVVSARKANDADVFNNAAQAWNHNLYWESFKGGPAAPKGTFAQQVEKDFQSLVGLQ
RKLVEQGDKVFGTGWVWLVRDGDKLDIIGMKDAINPLPDGKTVLLGIDVWEHAYYLDYENRRTAHVEAVVKDRVNWQVVG
ERWG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=36.4102564102564, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=36.4102564102564, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI67782309, Length=194, Percent_Identity=31.4432989690722, Blast_Score=81, Evalue=7e-16,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=40.5128205128205, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=32.1951219512195, Blast_Score=117, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=212, Percent_Identity=33.9622641509434, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17506561, Length=214, Percent_Identity=34.5794392523364, Blast_Score=95, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6321796, Length=205, Percent_Identity=32.6829268292683, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=33, Blast_Score=98, Evalue=6e-21,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 26610; Mature: 26610

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATPTASLLNASLPAASSRPAVSRRTALALGAGAMASVLAAPHVARAAVPFVLPPLPYP
CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHCCCEEECCCCCC
EDALVPTISARTVGLHYGKHHKGYYDKLNVLVQGKPYADMTLAEVVVSARKANDADVFNN
CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH
AAQAWNHNLYWESFKGGPAAPKGTFAQQVEKDFQSLVGLQRKLVEQGDKVFGTGWVWLVR
HHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEE
DGDKLDIIGMKDAINPLPDGKTVLLGIDVWEHAYYLDYENRRTAHVEAVVKDRVNWQVVG
CCCEEEEEECHHCCCCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCEEEEC
ERWG
CCCC
>Mature Secondary Structure
MDATPTASLLNASLPAASSRPAVSRRTALALGAGAMASVLAAPHVARAAVPFVLPPLPYP
CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHCCCEEECCCCCC
EDALVPTISARTVGLHYGKHHKGYYDKLNVLVQGKPYADMTLAEVVVSARKANDADVFNN
CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH
AAQAWNHNLYWESFKGGPAAPKGTFAQQVEKDFQSLVGLQRKLVEQGDKVFGTGWVWLVR
HHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEE
DGDKLDIIGMKDAINPLPDGKTVLLGIDVWEHAYYLDYENRRTAHVEAVVKDRVNWQVVG
CCCEEEEEECHHCCCCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCEEEEC
ERWG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9086394 [H]