| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is ydhK [H]
Identifier: 158422700
GI number: 158422700
Start: 1202210
End: 1204285
Strand: Direct
Name: ydhK [H]
Synonym: AZC_1076
Alternate gene names: 158422700
Gene position: 1202210-1204285 (Clockwise)
Preceding gene: 158422699
Following gene: 158422701
Centisome position: 22.39
GC content: 72.06
Gene sequence:
>2076_bases ATGATCGCGCTGCTGGCCAGCCTGCGCCCACGGGCGACGGACTGGATCTTCTCGCTGAAGACCTTCGCCGCCGCCATGAC GGCGCTCTTCATCGCGCTGTCCTGCGGGCTGGAGAAGCCCTTCTGGGCCATGGCGACGGTCTATATCGTCTCCTCGCCCA TGTCCGGTGCGCTGTCGTCCAAGGCGGTCTACCGGGTGCTGGGCACCATCATCGGTGCCACCGCGACGGTGGTGCTGGTG CCCAATCTCGTGAACGCCCCGGAACTGCTCAGCCTCGTCCTCGCGCTGTGGGTCGGCGGGTGCCTCGCCGTCTCGCTGCT CGACCGTACCCCGCGGTCCTACGTCACCATGCTCGGGGGCTACACGGTGGCGCTCATCGGCTTTCCGGCGGTGAGCGATC CCGGCGCGGTGTTCGACACGGCGGTGGCGCGGGTGGAGGAGATCGTGCTCGGCATCACCTGCGCCGGGCTGTTCGGCCAT CTGCTGCTGCCGCGCCACGTGGGCCCGATGGTCGCCGGCCGTATTGATGCCTGGCTCAAGGACGCGGGGGAGCTCACCCT CGACGCCTTCGCGGGCGTGACGGGCGCGGAGGCCCGCGCCAAGCGCGCCCGGCTGGCCGCCGACGCGACGGAACTGCACG GCCTGTCGGTGCACCTTGCCTATGACCATTCCCAGTTTCGCGGCACCACCGGCCTGATGCAGGCGCTGCGCGGCCGCATG CTGCTGCTGCTGCCCCTGCTGGGTGGCATTGCCGCGCGCGTGTCCTCCCTGAAGCAGGACGGCGCCCTGACCGACGACCT CGCGCAGGTGCTGGAGCGCCTTTCGGCCTGGACGCGGGCGGGCGAGGCGGTGGACGCGCAGGAGGCGGCATGGCTGCGTG CGCGTCTCGCGGACCTCAAGCCGGACACCGGCCCCGATGCCGCCTGGGCCGCGCTCCAGCAGGCCTATCTCATCGACCGC CTGAACCTCTTCATGGACGTGCGCGAGCAGTGCCGCGACCTCTGGCGCGCCGTGAAGAGCGGCGGGGCCGCGCTGCCACC TAGCCTCGACGGCAACCGCCGCCTGCCGCCCGCGGGCACGGTGCATCGCGATCCGCGCCTCGCGGTCTGGTCGGGGGCCT CGGCGATGCTCTCTATCCTGCTCTTCTGCGCCTTCTGGATCTCCAGCGGCTGGGCCGACGGCGCGACCGGCGCGCAGATG GTGGCGGTGGCCGCCTGCCTCATGGCCGGGCTCGACGATCCGGCGGTGGGCATCCTCTCCTTCGTGCGCGGCCTGCTGGT GGCCATCGCCGCAGTCTGCCTCTATGCCTTCGTGATCCTGCCGGGCACGGACGGCTTCCCGCTGCTGACATTCATGCTGG CGCTCTATCTGGTGCCTGCCGGCACGCTGATGAGCATGCCGGGCTGGGGCGGCACGGGCCTTGCTCTGTGCCTCAATTTC TCAGCGCTCATCGGCATTCAGGAGCGCTTCTCCGCCGATTTCGCCGCCACGCTCAATGGCGACATGGCCGCCGTCATCGG TATGCTGTTCGCCGCGGTGGTCGCGACGCTGGTGCGCTCCATGACGGTGCAGCAGGCCATCGGACGGCTGTTGCGGGCCA ATGCCTCGGACCTCGCGGCCATCGCGCAGAGCCCGGCGCAGGTGCGCGCCGACCCGCTGGCGGTGCGGATGCTGGACCGG CTGGGGCTGATCGTGCCCCGACTCGCCAAGGCCGGCCCCGACGCGCCCGAGGCGGGGCATGCCCTGCGCGAAGTCATCGC CGCCATCAATGTCGCGGACCTGAAGCGGGCCCGCCACGCGCTGCCGGCGGGGCCGCGCCGGGCGGTGGAGGAACTCCTCG GCCGCATCGCCGGTGCCGCCCGCGCGGCGGGCGAGGGCACGCTCTTCGATCAGGCCATGACCCCCGTCGCGCCGCCGCTC GATGATGCGCTCGGCGCGGTTCTGGCCCTGCCGTCCGGCGGACGGCGGGACGAGGCGCTCACCGCGCTGGTGGCGCTGCG CTGCGCCCTTGTGCCGGGCGCCGCCGCCTTCCGTCCGTCCGCCGTCCATGAACCCGTCTGGAAGGAGGCCGTGTGA
Upstream 100 bases:
>100_bases AGGAGGATCTCGCCCGCACGCTCCATGTGCTGCGCACCGTCGAGGGGCGCCTCGATCGTGAGGCGGAGACCCGTCGGCCC GGAGCGGAGGGAGATGCCGC
Downstream 100 bases:
>100_bases TGGCCGATCTCGATCTGCATGGGGTGTTCATTCCCCGTCTGCTGGTTCTGGCGGTCGCCGCTTACGTGACGCTGGCGCTG CTGCGTCCGCTCCTCGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 691
Protein sequence:
>691_residues MIALLASLRPRATDWIFSLKTFAAAMTALFIALSCGLEKPFWAMATVYIVSSPMSGALSSKAVYRVLGTIIGATATVVLV PNLVNAPELLSLVLALWVGGCLAVSLLDRTPRSYVTMLGGYTVALIGFPAVSDPGAVFDTAVARVEEIVLGITCAGLFGH LLLPRHVGPMVAGRIDAWLKDAGELTLDAFAGVTGAEARAKRARLAADATELHGLSVHLAYDHSQFRGTTGLMQALRGRM LLLLPLLGGIAARVSSLKQDGALTDDLAQVLERLSAWTRAGEAVDAQEAAWLRARLADLKPDTGPDAAWAALQQAYLIDR LNLFMDVREQCRDLWRAVKSGGAALPPSLDGNRRLPPAGTVHRDPRLAVWSGASAMLSILLFCAFWISSGWADGATGAQM VAVAACLMAGLDDPAVGILSFVRGLLVAIAAVCLYAFVILPGTDGFPLLTFMLALYLVPAGTLMSMPGWGGTGLALCLNF SALIGIQERFSADFAATLNGDMAAVIGMLFAAVVATLVRSMTVQQAIGRLLRANASDLAAIAQSPAQVRADPLAVRMLDR LGLIVPRLAKAGPDAPEAGHALREVIAAINVADLKRARHALPAGPRRAVEELLGRIAGAARAAGEGTLFDQAMTPVAPPL DDALGAVLALPSGGRRDEALTALVALRCALVPGAAAFRPSAVHEPVWKEAV
Sequences:
>Translated_691_residues MIALLASLRPRATDWIFSLKTFAAAMTALFIALSCGLEKPFWAMATVYIVSSPMSGALSSKAVYRVLGTIIGATATVVLV PNLVNAPELLSLVLALWVGGCLAVSLLDRTPRSYVTMLGGYTVALIGFPAVSDPGAVFDTAVARVEEIVLGITCAGLFGH LLLPRHVGPMVAGRIDAWLKDAGELTLDAFAGVTGAEARAKRARLAADATELHGLSVHLAYDHSQFRGTTGLMQALRGRM LLLLPLLGGIAARVSSLKQDGALTDDLAQVLERLSAWTRAGEAVDAQEAAWLRARLADLKPDTGPDAAWAALQQAYLIDR LNLFMDVREQCRDLWRAVKSGGAALPPSLDGNRRLPPAGTVHRDPRLAVWSGASAMLSILLFCAFWISSGWADGATGAQM VAVAACLMAGLDDPAVGILSFVRGLLVAIAAVCLYAFVILPGTDGFPLLTFMLALYLVPAGTLMSMPGWGGTGLALCLNF SALIGIQERFSADFAATLNGDMAAVIGMLFAAVVATLVRSMTVQQAIGRLLRANASDLAAIAQSPAQVRADPLAVRMLDR LGLIVPRLAKAGPDAPEAGHALREVIAAINVADLKRARHALPAGPRRAVEELLGRIAGAARAAGEGTLFDQAMTPVAPPL DDALGAVLALPSGGRRDEALTALVALRCALVPGAAAFRPSAVHEPVWKEAV >Mature_691_residues MIALLASLRPRATDWIFSLKTFAAAMTALFIALSCGLEKPFWAMATVYIVSSPMSGALSSKAVYRVLGTIIGATATVVLV PNLVNAPELLSLVLALWVGGCLAVSLLDRTPRSYVTMLGGYTVALIGFPAVSDPGAVFDTAVARVEEIVLGITCAGLFGH LLLPRHVGPMVAGRIDAWLKDAGELTLDAFAGVTGAEARAKRARLAADATELHGLSVHLAYDHSQFRGTTGLMQALRGRM LLLLPLLGGIAARVSSLKQDGALTDDLAQVLERLSAWTRAGEAVDAQEAAWLRARLADLKPDTGPDAAWAALQQAYLIDR LNLFMDVREQCRDLWRAVKSGGAALPPSLDGNRRLPPAGTVHRDPRLAVWSGASAMLSILLFCAFWISSGWADGATGAQM VAVAACLMAGLDDPAVGILSFVRGLLVAIAAVCLYAFVILPGTDGFPLLTFMLALYLVPAGTLMSMPGWGGTGLALCLNF SALIGIQERFSADFAATLNGDMAAVIGMLFAAVVATLVRSMTVQQAIGRLLRANASDLAAIAQSPAQVRADPLAVRMLDR LGLIVPRLAKAGPDAPEAGHALREVIAAINVADLKRARHALPAGPRRAVEELLGRIAGAARAAGEGTLFDQAMTPVAPPL DDALGAVLALPSGGRRDEALTALVALRCALVPGAAAFRPSAVHEPVWKEAV
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family [H]
Homologues:
Organism=Escherichia coli, GI1789636, Length=532, Percent_Identity=24.812030075188, Blast_Score=115, Evalue=8e-27, Organism=Escherichia coli, GI1787933, Length=545, Percent_Identity=24.7706422018349, Blast_Score=113, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006726 [H]
Pfam domain/function: PF04632 FUSC [H]
EC number: NA
Molecular weight: Translated: 72268; Mature: 72268
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALLASLRPRATDWIFSLKTFAAAMTALFIALSCGLEKPFWAMATVYIVSSPMSGALSS CEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH KAVYRVLGTIIGATATVVLVPNLVNAPELLSLVLALWVGGCLAVSLLDRTPRSYVTMLGG HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC YTVALIGFPAVSDPGAVFDTAVARVEEIVLGITCAGLFGHLLLPRHVGPMVAGRIDAWLK CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH DAGELTLDAFAGVTGAEARAKRARLAADATELHGLSVHLAYDHSQFRGTTGLMQALRGRM HCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHH LLLLPLLGGIAARVSSLKQDGALTDDLAQVLERLSAWTRAGEAVDAQEAAWLRARLADLK HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC PDTGPDAAWAALQQAYLIDRLNLFMDVREQCRDLWRAVKSGGAALPPSLDGNRRLPPAGT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC VHRDPRLAVWSGASAMLSILLFCAFWISSGWADGATGAQMVAVAACLMAGLDDPAVGILS CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH FVRGLLVAIAAVCLYAFVILPGTDGFPLLTFMLALYLVPAGTLMSMPGWGGTGLALCLNF HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHH SALIGIQERFSADFAATLNGDMAAVIGMLFAAVVATLVRSMTVQQAIGRLLRANASDLAA HHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IAQSPAQVRADPLAVRMLDRLGLIVPRLAKAGPDAPEAGHALREVIAAINVADLKRARHA HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC LPAGPRRAVEELLGRIAGAARAAGEGTLFDQAMTPVAPPLDDALGAVLALPSGGRRDEAL CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHEECCCCCCHHHHH TALVALRCALVPGAAAFRPSAVHEPVWKEAV HHHHHHHHHHCCCCHHCCCCHHCCCHHHCCC >Mature Secondary Structure MIALLASLRPRATDWIFSLKTFAAAMTALFIALSCGLEKPFWAMATVYIVSSPMSGALSS CEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH KAVYRVLGTIIGATATVVLVPNLVNAPELLSLVLALWVGGCLAVSLLDRTPRSYVTMLGG HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC YTVALIGFPAVSDPGAVFDTAVARVEEIVLGITCAGLFGHLLLPRHVGPMVAGRIDAWLK CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH DAGELTLDAFAGVTGAEARAKRARLAADATELHGLSVHLAYDHSQFRGTTGLMQALRGRM HCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHHH LLLLPLLGGIAARVSSLKQDGALTDDLAQVLERLSAWTRAGEAVDAQEAAWLRARLADLK HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC PDTGPDAAWAALQQAYLIDRLNLFMDVREQCRDLWRAVKSGGAALPPSLDGNRRLPPAGT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC VHRDPRLAVWSGASAMLSILLFCAFWISSGWADGATGAQMVAVAACLMAGLDDPAVGILS CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH FVRGLLVAIAAVCLYAFVILPGTDGFPLLTFMLALYLVPAGTLMSMPGWGGTGLALCLNF HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHH SALIGIQERFSADFAATLNGDMAAVIGMLFAAVVATLVRSMTVQQAIGRLLRANASDLAA HHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IAQSPAQVRADPLAVRMLDRLGLIVPRLAKAGPDAPEAGHALREVIAAINVADLKRARHA HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC LPAGPRRAVEELLGRIAGAARAAGEGTLFDQAMTPVAPPLDDALGAVLALPSGGRRDEAL CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHEECCCCCCHHHHH TALVALRCALVPGAAAFRPSAVHEPVWKEAV HHHHHHHHHHCCCCHHCCCCHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]