| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is bphB [H]
Identifier: 158422539
GI number: 158422539
Start: 1025565
End: 1028117
Strand: Direct
Name: bphB [H]
Synonym: AZC_0915
Alternate gene names: 158422539
Gene position: 1025565-1028117 (Clockwise)
Preceding gene: 158422538
Following gene: 158422540
Centisome position: 19.1
GC content: 67.41
Gene sequence:
>2553_bases ATGCCGAATGCCGAAGCCGTCGACCTGACCAATTGCGATCGCGAGCCCATCCATATCCCAGGCTCTATCCAACCCCATGG CTGCCTGATCGCCTGTACGCCGGATGCGGGCCATATCCTCTGTCACTCCGCCAACGCAGCCGATGTGCTTCATCTGCCCT CCGCCGGCATCAACGGCCTGCGGCTCGAGGCGGTGCTTGGCGGCAAGGCCGCCCACGACATCCGCAATGCGCTGACGACA GCCACCGATCCCGCGCGGCCCGGCCTGCTGCTTGGCCTCAATATCGGCGAGCGCGCCTTCGATGTGGCGGTCCATATCTA CAAGGGCGTCGTCATCATCGAATGTGAGGCGGCGCCGAAAGGGCGCTCGGGCACGCCGGTGGAATTCGTCCGGGCGCTCA TCTCGCAGGTGAGCCGGCTGGGCGAGCCGGACGTGCTGCTGCGCCGGGCCAGCCATCTGGTGCGCACGCTGCTGGGCTAT GACCGGGTGATGATCTACCGGTTCGATGCCGACGGTTCGGGCAAGGTGGTGAGCGAAGCCCGGATGCCGAGCCTCGAGAG CTTCCTCGGCCAGCACTTTCCCGCCGGCGACATTCCCCGCCAGGCGCGCGAACTCTATCTGAAGAACATCATCCGCATCG TCTCGGATTCTTCCGGCGCCCGCATCCCCATGGAACCCGAGTTCAATGCGTCGGGCGAGCCGCTGGATCTGTCCTTCGCC CATCTGCGCAGCGTCTCGCCCATCCATTGCGAATATCTGCGCAACATGGGCGTCAGCGCCTCCATGTCGCTCTCCATCGT CATCGGCGGCCAGCTCTGGGGCCTGATCGCCTGCCATCATTACAGCCCGCGCGTCCTCTCCATGGCAGAGCGGATCGGCG CGGAGATGTTCGCCGAATTCTTCTCGCTGCATCTGGAAGCGGTGAACCACCGCGAGAAGCTGGAGGTGGCCACCCGTGCC CGGCGGACGCTCGACCGCATCCTCGGGCATGCCGCCCGCTATGCGGGGCTCCCCGAGCTTCTGCGTGGCTCGCTGGCGGA CTTCATGGGCCTGATGCCCTGCGACGGTGTGGGCCTCTGGATCGAAGGCGAATGGACGAGCCACGGCGTGGCCCTGCCGG CCCCGGCGGCACCCGCGCTCGCCCGCGCGGTGGCCACCCATGGCGAGGGGCCGGTGTGGGCGAGCCATACGCTCTCCCAC ATCCTGCCGGAGGTGTCCGCTTATGGCGTCCCCGTGGCCGGCGCTCTCGCCATTTCCCTCTCGCACCGCCCGCGCGACTA TCTGTTCTTCTTCCGCAAGGAGGCGGTGCAGACGGTGGAATGGGCGGGCAACCCGCACAAGCATTATGCCACCGGCCTTC ACGGCGATCGTCTTACCCCGCGCAAGAGCTTCGCCATCTGGAAGGAAACGGTGGAGCACCAGTCCTGGCCCTGGACGCAG GCGGACCGCGACTTCGCCGAAGCCGCTCGCAATGCCTTGGTGGAGATCGTGCTGCGGCACAATGAGCTGCTGGCCGACGA GCGCGGCAAGGCGGACGTGCGCCAGCGCCTGCTGAATGAGGAGCTCAACCACCGGGTCAAGAACATCCTCGCCCTCATCA AGTCGCTGGTGTCCCATCCCGTGACCGAGGCGACCGATGTCGCGAGCTACTCCCGCAGCCTCAAGGGACGCATCGAGGCC CTGGCCTATGCGCACGATCAGGTGGTGCGGGGCGATGGCGGCGGGCTGCTGTCGGACCTTCTCACCGCCGAGTTGTCGCC CTATCGCGACGCCACGGCGGTGACGCTGGACGGGCGGCCGCTGATGCTGGACGCGCAGGCCTTCTCGGTGATGGCGCTGG TGTTTCATGAGATGGCGACCAATGCCGCCAAATACGGCAGCCTCTCCACGCCCGGCGGTCGGCTCATGGTGCGCTGGGTG CCGGCTCCGGCGGGCGGCTGTGACATCACCTGGGAGGAAAGCGGCGGGCCGCCGGTCCAGGCCGCAGGGCGACGCGGTTT TGGCTCCGTGCTCGTGGACCGCAGCGTGCCCTATGACCTCGGCGGCTTCAGCGCCATCGAATATCTGGTGAGCGGCGTGA AGGCGCGGTTCAGCATTCCAGGCCGCCACATCACCTGGCAGGGCAGCGATCCAAGGACAGTTGCGCCTGCTTCGGCTTCG GACGCCCCACCGCCCGATGACCTGCCGCTGCGCGGGCTCAGTCTGCTGGTGGTCGAAGACCAGTTGCTGATCGCCATGGA GGCGGAGGCCATGCTGCTGGCGCTCGGCGCGGAAGCGGTGGAGACCTGCAACTCGGCGCTGGAGGCGGAGAACCGCCTTG CCCGGTTCCGTCCCGATGCGGCGGTGCTGGACATTCACCTCAGCGGCGGGACCTCCGTTCCGGTGGCACAGGAACTGCGC CGGCGGCAGATTCCGTTCGTGTTCGCCTCCGGCTATGCGGATCTCGACAACATCCCCGACGAGCTTGCCGACGTGCCATT GGCCCGCAAGCCCTATGACGGCAAGGCGCTCGCCTTCGCGCTGACACAGGCGCGGGCGGAGGCCGGTGTTTAG
Upstream 100 bases:
>100_bases GTCGTCCATCCGCTGTATTCGGGGTGCCGCTTGAGATCCCGGGGATGGGGGCTTGGCCCGTTCGACAAAGGCGTCGGAGG GCCCTCGCGGGACCTGATGA
Downstream 100 bases:
>100_bases GCGCGGTCTGAATGCCCGTTCAGGCCTTTGCGTTCTTCACGGGAATGTAAGCGTCAGCGCGCCGGTTAGGCCTCGCCCTT GCCGGGGTGGCATGCCACTC
Product: bacteriophytochrome
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 849
Protein sequence:
>850_residues MPNAEAVDLTNCDREPIHIPGSIQPHGCLIACTPDAGHILCHSANAADVLHLPSAGINGLRLEAVLGGKAAHDIRNALTT ATDPARPGLLLGLNIGERAFDVAVHIYKGVVIIECEAAPKGRSGTPVEFVRALISQVSRLGEPDVLLRRASHLVRTLLGY DRVMIYRFDADGSGKVVSEARMPSLESFLGQHFPAGDIPRQARELYLKNIIRIVSDSSGARIPMEPEFNASGEPLDLSFA HLRSVSPIHCEYLRNMGVSASMSLSIVIGGQLWGLIACHHYSPRVLSMAERIGAEMFAEFFSLHLEAVNHREKLEVATRA RRTLDRILGHAARYAGLPELLRGSLADFMGLMPCDGVGLWIEGEWTSHGVALPAPAAPALARAVATHGEGPVWASHTLSH ILPEVSAYGVPVAGALAISLSHRPRDYLFFFRKEAVQTVEWAGNPHKHYATGLHGDRLTPRKSFAIWKETVEHQSWPWTQ ADRDFAEAARNALVEIVLRHNELLADERGKADVRQRLLNEELNHRVKNILALIKSLVSHPVTEATDVASYSRSLKGRIEA LAYAHDQVVRGDGGGLLSDLLTAELSPYRDATAVTLDGRPLMLDAQAFSVMALVFHEMATNAAKYGSLSTPGGRLMVRWV PAPAGGCDITWEESGGPPVQAAGRRGFGSVLVDRSVPYDLGGFSAIEYLVSGVKARFSIPGRHITWQGSDPRTVAPASAS DAPPPDDLPLRGLSLLVVEDQLLIAMEAEAMLLALGAEAVETCNSALEAENRLARFRPDAAVLDIHLSGGTSVPVAQELR RRQIPFVFASGYADLDNIPDELADVPLARKPYDGKALAFALTQARAEAGV
Sequences:
>Translated_850_residues MPNAEAVDLTNCDREPIHIPGSIQPHGCLIACTPDAGHILCHSANAADVLHLPSAGINGLRLEAVLGGKAAHDIRNALTT ATDPARPGLLLGLNIGERAFDVAVHIYKGVVIIECEAAPKGRSGTPVEFVRALISQVSRLGEPDVLLRRASHLVRTLLGY DRVMIYRFDADGSGKVVSEARMPSLESFLGQHFPAGDIPRQARELYLKNIIRIVSDSSGARIPMEPEFNASGEPLDLSFA HLRSVSPIHCEYLRNMGVSASMSLSIVIGGQLWGLIACHHYSPRVLSMAERIGAEMFAEFFSLHLEAVNHREKLEVATRA RRTLDRILGHAARYAGLPELLRGSLADFMGLMPCDGVGLWIEGEWTSHGVALPAPAAPALARAVATHGEGPVWASHTLSH ILPEVSAYGVPVAGALAISLSHRPRDYLFFFRKEAVQTVEWAGNPHKHYATGLHGDRLTPRKSFAIWKETVEHQSWPWTQ ADRDFAEAARNALVEIVLRHNELLADERGKADVRQRLLNEELNHRVKNILALIKSLVSHPVTEATDVASYSRSLKGRIEA LAYAHDQVVRGDGGGLLSDLLTAELSPYRDATAVTLDGRPLMLDAQAFSVMALVFHEMATNAAKYGSLSTPGGRLMVRWV PAPAGGCDITWEESGGPPVQAAGRRGFGSVLVDRSVPYDLGGFSAIEYLVSGVKARFSIPGRHITWQGSDPRTVAPASAS DAPPPDDLPLRGLSLLVVEDQLLIAMEAEAMLLALGAEAVETCNSALEAENRLARFRPDAAVLDIHLSGGTSVPVAQELR RRQIPFVFASGYADLDNIPDELADVPLARKPYDGKALAFALTQARAEAGV >Mature_849_residues PNAEAVDLTNCDREPIHIPGSIQPHGCLIACTPDAGHILCHSANAADVLHLPSAGINGLRLEAVLGGKAAHDIRNALTTA TDPARPGLLLGLNIGERAFDVAVHIYKGVVIIECEAAPKGRSGTPVEFVRALISQVSRLGEPDVLLRRASHLVRTLLGYD RVMIYRFDADGSGKVVSEARMPSLESFLGQHFPAGDIPRQARELYLKNIIRIVSDSSGARIPMEPEFNASGEPLDLSFAH LRSVSPIHCEYLRNMGVSASMSLSIVIGGQLWGLIACHHYSPRVLSMAERIGAEMFAEFFSLHLEAVNHREKLEVATRAR RTLDRILGHAARYAGLPELLRGSLADFMGLMPCDGVGLWIEGEWTSHGVALPAPAAPALARAVATHGEGPVWASHTLSHI LPEVSAYGVPVAGALAISLSHRPRDYLFFFRKEAVQTVEWAGNPHKHYATGLHGDRLTPRKSFAIWKETVEHQSWPWTQA DRDFAEAARNALVEIVLRHNELLADERGKADVRQRLLNEELNHRVKNILALIKSLVSHPVTEATDVASYSRSLKGRIEAL AYAHDQVVRGDGGGLLSDLLTAELSPYRDATAVTLDGRPLMLDAQAFSVMALVFHEMATNAAKYGSLSTPGGRLMVRWVP APAGGCDITWEESGGPPVQAAGRRGFGSVLVDRSVPYDLGGFSAIEYLVSGVKARFSIPGRHITWQGSDPRTVAPASASD APPPDDLPLRGLSLLVVEDQLLIAMEAEAMLLALGAEAVETCNSALEAENRLARFRPDAAVLDIHLSGGTSVPVAQELRR RQIPFVFASGYADLDNIPDELADVPLARKPYDGKALAFALTQARAEAGV
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 91794; Mature: 91663
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNAEAVDLTNCDREPIHIPGSIQPHGCLIACTPDAGHILCHSANAADVLHLPSAGINGL CCCCCEEECCCCCCCCEECCCCCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCCCCE RLEAVLGGKAAHDIRNALTTATDPARPGLLLGLNIGERAFDVAVHIYKGVVIIECEAAPK EEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEEEECCCCC GRSGTPVEFVRALISQVSRLGEPDVLLRRASHLVRTLLGYDRVMIYRFDADGSGKVVSEA CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH RMPSLESFLGQHFPAGDIPRQARELYLKNIIRIVSDSSGARIPMEPEFNASGEPLDLSFA CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH HLRSVSPIHCEYLRNMGVSASMSLSIVIGGQLWGLIACHHYSPRVLSMAERIGAEMFAEF HHCCCCCHHHHHHHCCCCCCCEEEEEEECCCEEEHHEECCCCCHHHHHHHHHHHHHHHHH FSLHLEAVNHREKLEVATRARRTLDRILGHAARYAGLPELLRGSLADFMGLMPCDGVGLW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEE IEGEWTSHGVALPAPAAPALARAVATHGEGPVWASHTLSHILPEVSAYGVPVAGALAISL EECCCCCCCEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEEEE SHRPRDYLFFFRKEAVQTVEWAGNPHKHYATGLHGDRLTPRKSFAIWKETVEHQSWPWTQ CCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC ADRDFAEAARNALVEIVLRHNELLADERGKADVRQRLLNEELNHRVKNILALIKSLVSHP CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VTEATDVASYSRSLKGRIEALAYAHDQVVRGDGGGLLSDLLTAELSPYRDATAVTLDGRP CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCE LMLDAQAFSVMALVFHEMATNAAKYGSLSTPGGRLMVRWVPAPAGGCDITWEESGGPPVQ EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCH AAGRRGFGSVLVDRSVPYDLGGFSAIEYLVSGVKARFSIPGRHITWQGSDPRTVAPASAS HCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCHHEEECCCCEEEECCCCCCEECCCCCC DAPPPDDLPLRGLSLLVVEDQLLIAMEAEAMLLALGAEAVETCNSALEAENRLARFRPDA CCCCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC AVLDIHLSGGTSVPVAQELRRRQIPFVFASGYADLDNIPDELADVPLARKPYDGKALAFA EEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCHHHHH LTQARAEAGV HHHHHHHCCC >Mature Secondary Structure PNAEAVDLTNCDREPIHIPGSIQPHGCLIACTPDAGHILCHSANAADVLHLPSAGINGL CCCCEEECCCCCCCCEECCCCCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCCCCE RLEAVLGGKAAHDIRNALTTATDPARPGLLLGLNIGERAFDVAVHIYKGVVIIECEAAPK EEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEEEECCCCC GRSGTPVEFVRALISQVSRLGEPDVLLRRASHLVRTLLGYDRVMIYRFDADGSGKVVSEA CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH RMPSLESFLGQHFPAGDIPRQARELYLKNIIRIVSDSSGARIPMEPEFNASGEPLDLSFA CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH HLRSVSPIHCEYLRNMGVSASMSLSIVIGGQLWGLIACHHYSPRVLSMAERIGAEMFAEF HHCCCCCHHHHHHHCCCCCCCEEEEEEECCCEEEHHEECCCCCHHHHHHHHHHHHHHHHH FSLHLEAVNHREKLEVATRARRTLDRILGHAARYAGLPELLRGSLADFMGLMPCDGVGLW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEE IEGEWTSHGVALPAPAAPALARAVATHGEGPVWASHTLSHILPEVSAYGVPVAGALAISL EECCCCCCCEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEEEE SHRPRDYLFFFRKEAVQTVEWAGNPHKHYATGLHGDRLTPRKSFAIWKETVEHQSWPWTQ CCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC ADRDFAEAARNALVEIVLRHNELLADERGKADVRQRLLNEELNHRVKNILALIKSLVSHP CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VTEATDVASYSRSLKGRIEALAYAHDQVVRGDGGGLLSDLLTAELSPYRDATAVTLDGRP CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCE LMLDAQAFSVMALVFHEMATNAAKYGSLSTPGGRLMVRWVPAPAGGCDITWEESGGPPVQ EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCH AAGRRGFGSVLVDRSVPYDLGGFSAIEYLVSGVKARFSIPGRHITWQGSDPRTVAPASAS HCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCHHEEECCCCEEEECCCCCCEECCCCCC DAPPPDDLPLRGLSLLVVEDQLLIAMEAEAMLLALGAEAVETCNSALEAENRLARFRPDA CCCCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC AVLDIHLSGGTSVPVAQELRRRQIPFVFASGYADLDNIPDELADVPLARKPYDGKALAFA EEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCHHHHH LTQARAEAGV HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]