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The map label for this gene is lysR [H]

Identifier: 158422536

GI number: 158422536

Start: 1021059

End: 1021997

Strand: Direct

Name: lysR [H]

Synonym: AZC_0912

Alternate gene names: 158422536

Gene position: 1021059-1021997 (Clockwise)

Preceding gene: 158422535

Following gene: 158422538

Centisome position: 19.01

GC content: 69.54

Gene sequence:

>939_bases
ATGATTGCCTGGGACGACTTCCGGCTGGTCAAAGCCATAGCGGAGACACGATCCCTCGCTGGCGCCGCGGAGGTGCTGGG
GGTCAACCATTCCACGGTCTTCCGGCGCCTCGGCGCGCTGGAGGCCCTGCTCGGAGCGCGCCTGTTCGAGCGCGCCCGCA
CCGGCTATGCTCCGACCGTGACCGGGGAAGAACTGGTCCGCCTTGCCGAGCGCATGGGCGAGGAAATCACCTCCATCGAG
CGCCGCATCACGGGACGCGACCTGCGCCCCTCCGGGGAACTGCGCGTCACCACCAACGACACGCTGCTGGTGCATCTCCT
GACGCCGGTCTTCGCCTCCTTCCGCGCGGCCTATCCCGAAATCCGGCTGGAGATCATCGTCTCCAACCAGACCCTCAACC
TCACCAAGCGCGATGCCGACGTGGCGGTGCGGGCGAGCGACCGGCCGGGCGATGCGCTGGTCGGGCGGCGCGTGGCCTCC
ATCGCCTGGGGCGTTTATGGGGCGGCGGGCGGTCCGGACACGCGGGCCTTCGAACTCGCCCATATGCGCCAGCACAATTG
GGTGGGCTTCGCCGAACCCATCGGCGCCATCAAGGCCGCCAAATGGCTGAAGGAGCGGGCGGGCGAGGACCGCATCGTCT
ATCGGGTGAACACGCTGCTCGGCCTTGCGCAGGCGGCGGCGGCCGGCATGGGGCTGGCGGTGCTGCCCTGCTTCATCGGC
GCGGCGACGCCGGGCCTCACGCGGTTGCAGGCGCTCGATGCGGAGATCGACGGCAGCCTCTGGCTGCTCACCCATCCCGA
TATCAAGCAGACCGCCCGCGTGCGGGCCTTCATGGATTATGTGGGGCGCGAACTCGGCAAGCGCCGCGCCATATTGGAGG
GCCGCGACGGTGACGCCGCCGAGCCGCTCGGCAGTGACGATGTCGTGTCCGTCGCGTGA

Upstream 100 bases:

>100_bases
CCCGCCTCCCGCGTTGTTCTGGATGCGGGGGGCTGGTTTTCTGCGTAGAGCGCGATACCATCGATGGTAGCGACCCTCGG
TTGTAAGGCGGCCCTATGAC

Downstream 100 bases:

>100_bases
AGCGCGCCGGCGTCAGCCGAGATCGCGGAAACCGTTGGTGATGGGATAGCGCCGGTCGCGGCCGAAGTTGCGGGTCGTCA
CCTTCACGCCCGGCGCCGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MIAWDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTVTGEELVRLAERMGEEITSIE
RRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPEIRLEIIVSNQTLNLTKRDADVAVRASDRPGDALVGRRVAS
IAWGVYGAAGGPDTRAFELAHMRQHNWVGFAEPIGAIKAAKWLKERAGEDRIVYRVNTLLGLAQAAAAGMGLAVLPCFIG
AATPGLTRLQALDAEIDGSLWLLTHPDIKQTARVRAFMDYVGRELGKRRAILEGRDGDAAEPLGSDDVVSVA

Sequences:

>Translated_312_residues
MIAWDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTVTGEELVRLAERMGEEITSIE
RRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPEIRLEIIVSNQTLNLTKRDADVAVRASDRPGDALVGRRVAS
IAWGVYGAAGGPDTRAFELAHMRQHNWVGFAEPIGAIKAAKWLKERAGEDRIVYRVNTLLGLAQAAAAGMGLAVLPCFIG
AATPGLTRLQALDAEIDGSLWLLTHPDIKQTARVRAFMDYVGRELGKRRAILEGRDGDAAEPLGSDDVVSVA
>Mature_312_residues
MIAWDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTVTGEELVRLAERMGEEITSIE
RRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPEIRLEIIVSNQTLNLTKRDADVAVRASDRPGDALVGRRVAS
IAWGVYGAAGGPDTRAFELAHMRQHNWVGFAEPIGAIKAAKWLKERAGEDRIVYRVNTLLGLAQAAAAGMGLAVLPCFIG
AATPGLTRLQALDAEIDGSLWLLTHPDIKQTARVRAFMDYVGRELGKRRAILEGRDGDAAEPLGSDDVVSVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=25.0825082508251, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787589, Length=232, Percent_Identity=25.4310344827586, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33829; Mature: 33829

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAWDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTV
CCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TGEELVRLAERMGEEITSIERRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPE
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHCCCC
IRLEIIVSNQTLNLTKRDADVAVRASDRPGDALVGRRVASIAWGVYGAAGGPDTRAFELA
EEEEEEEECCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
HMRQHNWVGFAEPIGAIKAAKWLKERAGEDRIVYRVNTLLGLAQAAAAGMGLAVLPCFIG
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH
AATPGLTRLQALDAEIDGSLWLLTHPDIKQTARVRAFMDYVGRELGKRRAILEGRDGDAA
CCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EPLGSDDVVSVA
CCCCCCCCEECC
>Mature Secondary Structure
MIAWDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTV
CCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TGEELVRLAERMGEEITSIERRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPE
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHCCCC
IRLEIIVSNQTLNLTKRDADVAVRASDRPGDALVGRRVASIAWGVYGAAGGPDTRAFELA
EEEEEEEECCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
HMRQHNWVGFAEPIGAIKAAKWLKERAGEDRIVYRVNTLLGLAQAAAAGMGLAVLPCFIG
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH
AATPGLTRLQALDAEIDGSLWLLTHPDIKQTARVRAFMDYVGRELGKRRAILEGRDGDAA
CCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EPLGSDDVVSVA
CCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]