The gene/protein map for NC_009937 is currently unavailable.
Definition Azorhizobium caulinodans ORS 571, complete genome.
Accession NC_009937
Length 5,369,772

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The map label for this gene is ydaD [H]

Identifier: 158422448

GI number: 158422448

Start: 931106

End: 932008

Strand: Reverse

Name: ydaD [H]

Synonym: AZC_0824

Alternate gene names: 158422448

Gene position: 932008-931106 (Counterclockwise)

Preceding gene: 158422449

Following gene: 158422447

Centisome position: 17.36

GC content: 65.45

Gene sequence:

>903_bases
TTGACCTCCATGCCACCGGTTTCCTCAACCGAACGGAGCACCGCCATGCCGCCCTATCCCACCCCGCCTCTACCGCCGCA
GCAGCAGCGGATGCCCGGACTGACGGACGCCATGGACCCCCGCCCGGACCACGGGGAGGCGTCCTATGTGGGCTCGGGCC
GGCTCAATGGCCTGAAAGCCCTCGTGACCGGGGGCGACAGCGGCATCGGCCGGGCCGTTTGCATCGCTTTCGCGCGGGAA
GGGGCAGACGTCTGCATTTCCTATCTTGATGAGGACGAGGATGCGCAGGAGACCCGCCGGCTTGTGGAAGAGGCGGGCCG
CAAGGCTGTGCTGATCCCCGGCGATATCTCCGACCCCGCCTTCTGCCGGGATCTGGTGGAGGAAGCCGCGACGGCACTCG
GCGGTCTCGACATTCTCGTCAACAATGCCGCCCATCAAGCGACCTTCGAGCGCCTCGAGGACATATCGGATGAGGAATGG
GCCCATACGTTCGACGTGAACCTGCACCCTATGTTCTATCTTACCAAGGCGGCGCTGAAGCACATGACCTCCGGCGGCAG
CATCATCAACACCGCCTCCATCAATTCGGACATGCCGAACCCGTCGCTGCTGGCCTACGCCACCACCAAGGGCGCCATTC
ACAACCTCACGGCCGGGCTGGCCCAGGCGCTGGCCGATCGCAACGTGCGGGTGAACGCGGTGGCGCCGGGTCCCATCTGG
ACGCCGCTCATCCCATCCACCATGTCGGAAGATTCCGTCACGAATTTCGGGAAATCCGTGCCCATGGGGCGCCCTGGCCA
GCCGGCGGAACTCGCCACGGCCTATGTGATGCTCGCGGACCCGAAGTCGAGCTATGTCTCCGGCGCGACCATCGCTGTCA
CGGGCGGCAAGCCGTTTCTCTGA

Upstream 100 bases:

>100_bases
GGCGAGACGCGCGACCAGGATAAATGAGCGTCAACTTGACAGAAGCTGGGAGAAAGAGCGTGCGGAACGTCTGGCAGGGA
ACTGCCCAGCGCGGAGCAGG

Downstream 100 bases:

>100_bases
ACGCCTGCGGGAGGGCGGTCCGACGCCCTGGCGACCCTGATCTCCGGCTTGGAGGAGCCTCCGCCCCTCTCCGCCGGAGC
TCGGGAAAATAAATCCCGGA

Product: oxidoreductase

Products: NA

Alternate protein names: GSP39 [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTSMPPVSSTERSTAMPPYPTPPLPPQQQRMPGLTDAMDPRPDHGEASYVGSGRLNGLKALVTGGDSGIGRAVCIAFARE
GADVCISYLDEDEDAQETRRLVEEAGRKAVLIPGDISDPAFCRDLVEEAATALGGLDILVNNAAHQATFERLEDISDEEW
AHTFDVNLHPMFYLTKAALKHMTSGGSIINTASINSDMPNPSLLAYATTKGAIHNLTAGLAQALADRNVRVNAVAPGPIW
TPLIPSTMSEDSVTNFGKSVPMGRPGQPAELATAYVMLADPKSSYVSGATIAVTGGKPFL

Sequences:

>Translated_300_residues
MTSMPPVSSTERSTAMPPYPTPPLPPQQQRMPGLTDAMDPRPDHGEASYVGSGRLNGLKALVTGGDSGIGRAVCIAFARE
GADVCISYLDEDEDAQETRRLVEEAGRKAVLIPGDISDPAFCRDLVEEAATALGGLDILVNNAAHQATFERLEDISDEEW
AHTFDVNLHPMFYLTKAALKHMTSGGSIINTASINSDMPNPSLLAYATTKGAIHNLTAGLAQALADRNVRVNAVAPGPIW
TPLIPSTMSEDSVTNFGKSVPMGRPGQPAELATAYVMLADPKSSYVSGATIAVTGGKPFL
>Mature_299_residues
TSMPPVSSTERSTAMPPYPTPPLPPQQQRMPGLTDAMDPRPDHGEASYVGSGRLNGLKALVTGGDSGIGRAVCIAFAREG
ADVCISYLDEDEDAQETRRLVEEAGRKAVLIPGDISDPAFCRDLVEEAATALGGLDILVNNAAHQATFERLEDISDEEWA
HTFDVNLHPMFYLTKAALKHMTSGGSIINTASINSDMPNPSLLAYATTKGAIHNLTAGLAQALADRNVRVNAVAPGPIWT
PLIPSTMSEDSVTNFGKSVPMGRPGQPAELATAYVMLADPKSSYVSGATIAVTGGKPFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=34.3873517786561, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=33.0612244897959, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=33.920704845815, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI19923817, Length=269, Percent_Identity=28.2527881040892, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=29.1338582677165, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=28.6885245901639, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=31.1203319502075, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=27.4193548387097, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=31.2796208530806, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=29.7619047619048, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=33.8888888888889, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI4504505, Length=209, Percent_Identity=31.1004784688995, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=27.734375, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=39.8058252427184, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=31.7204301075269, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503301, Length=227, Percent_Identity=25.1101321585903, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI32455239, Length=188, Percent_Identity=26.5957446808511, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031765, Length=188, Percent_Identity=26.5957446808511, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=31.1764705882353, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=281, Percent_Identity=52.6690391459075, Blast_Score=289, Evalue=1e-79,
Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=37.5, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=32.6923076923077, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=34.0163934426229, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=32.3651452282158, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=30.2040816326531, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=32.520325203252, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.1967213114754, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.0204081632653, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=28.7937743190661, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=28.4584980237154, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=28.7292817679558, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=36.3636363636364, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=35.1239669421488, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=32.5757575757576, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=31.2977099236641, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=34.5864661654135, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=32.2097378277154, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.9391634980989, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.6923076923077, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.5789473684211, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=30.0751879699248, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=31.8352059925094, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=242, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=31.0861423220974, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=29.8850574712644, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=29.4339622641509, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=28.4, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=30.9236947791165, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=31.4606741573034, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=29.4339622641509, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=28.1481481481481, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=28.740157480315, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=27.4436090225564, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=27.9245283018868, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=247, Percent_Identity=30.3643724696356, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=27.9527559055118, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=29.1828793774319, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=29.3436293436293, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=27.3469387755102, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=26.4591439688716, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=207, Percent_Identity=28.5024154589372, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=252, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=201, Percent_Identity=25.3731343283582, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=251, Percent_Identity=27.0916334661355, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=27.1794871794872, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=204, Percent_Identity=27.9411764705882, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=33.7301587301587, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=31.0756972111554, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21357041, Length=243, Percent_Identity=28.8065843621399, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=30.0411522633745, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.4, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=31.2757201646091, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24644337, Length=235, Percent_Identity=33.6170212765957, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=30.7392996108949, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI17737361, Length=250, Percent_Identity=26.8, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=31.6326530612245, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=25.2475247524752, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31674; Mature: 31543

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTSMPPVSSTERSTAMPPYPTPPLPPQQQRMPGLTDAMDPRPDHGEASYVGSGRLNGLKA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCEEE
LVTGGDSGIGRAVCIAFAREGADVCISYLDEDEDAQETRRLVEEAGRKAVLIPGDISDPA
EEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHH
FCRDLVEEAATALGGLDILVNNAAHQATFERLEDISDEEWAHTFDVNLHPMFYLTKAALK
HHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
HMTSGGSIINTASINSDMPNPSLLAYATTKGAIHNLTAGLAQALADRNVRVNAVAPGPIW
HHCCCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
TPLIPSTMSEDSVTNFGKSVPMGRPGQPAELATAYVMLADPKSSYVSGATIAVTGGKPFL
CCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHEEEEEEEECCCCHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
TSMPPVSSTERSTAMPPYPTPPLPPQQQRMPGLTDAMDPRPDHGEASYVGSGRLNGLKA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCEEE
LVTGGDSGIGRAVCIAFAREGADVCISYLDEDEDAQETRRLVEEAGRKAVLIPGDISDPA
EEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHH
FCRDLVEEAATALGGLDILVNNAAHQATFERLEDISDEEWAHTFDVNLHPMFYLTKAALK
HHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
HMTSGGSIINTASINSDMPNPSLLAYATTKGAIHNLTAGLAQALADRNVRVNAVAPGPIW
HHCCCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
TPLIPSTMSEDSVTNFGKSVPMGRPGQPAELATAYVMLADPKSSYVSGATIAVTGGKPFL
CCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHEEEEEEEECCCCHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]