| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is dut
Identifier: 158422331
GI number: 158422331
Start: 786507
End: 786980
Strand: Direct
Name: dut
Synonym: AZC_0707
Alternate gene names: 158422331
Gene position: 786507-786980 (Clockwise)
Preceding gene: 158422330
Following gene: 158422332
Centisome position: 14.65
GC content: 66.88
Gene sequence:
>474_bases ATGAGCGCGACGCGCCTTGACGTGCCCGTGGTCCGCCTGCCGCATGGCATGGACCTGCCTTTGCCCGAATATGCCACGGC CGCCTCGGCGGGCATGGACCTTGTGGCCGCCGTGCCGGCCGAGGTGCCGCTCGTGATTGCCCCCGGGGCCTGGGCGTTGG TCCCCACTGGGCTGGCCCTCGAATTGCCCGAGGGCATGGAGGCGCAGGTGCGCCCCCGCTCCGGCCTCGCGCTCAAGTTC GGCGTCACCGTGCTCAACGCGCCGGGCACCATCGATGCCGACTATCGCGGCGAGGTCGGCGTCATCCTCATCAACCACGG ACGCGAACCCTTCACGGTTTCCCGTGGAATGCGCATCGCACAGATGGTGATTGCGGGAGTTCAACAAATAACGCTGGTGG AAACTGGAAATTTGGGCGAAACTGCACGCGGCGTCGGTGGTTTCGGCTCGACAGGGCTCGACCGGACGCCCTAA
Upstream 100 bases:
>100_bases CCTGACCTTCGAAGACTTAACTCCAAGCCACAACTCCGGCCCCGCCGGACCGTGCCCCATCCCTCCGGCGGCCGCGCCGC CTTGCATCCGAGGATGACAG
Downstream 100 bases:
>100_bases CCGGGATAGCCACAGCCCCATGCCGCGTTTGTCCGACAAGAGTCTTCTCGCCATCGCCGCCGTCGTCGATGTCGCCGTTC ACGCCCGTGGAACGCCGGTG
Product: deoxyuridine 5'-triphosphate nucleotidohydrolase
Products: NA
Alternate protein names: dUTPase; dUTP pyrophosphatase
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MSATRLDVPVVRLPHGMDLPLPEYATAASAGMDLVAAVPAEVPLVIAPGAWALVPTGLALELPEGMEAQVRPRSGLALKF GVTVLNAPGTIDADYRGEVGVILINHGREPFTVSRGMRIAQMVIAGVQQITLVETGNLGETARGVGGFGSTGLDRTP
Sequences:
>Translated_157_residues MSATRLDVPVVRLPHGMDLPLPEYATAASAGMDLVAAVPAEVPLVIAPGAWALVPTGLALELPEGMEAQVRPRSGLALKF GVTVLNAPGTIDADYRGEVGVILINHGREPFTVSRGMRIAQMVIAGVQQITLVETGNLGETARGVGGFGSTGLDRTP >Mature_156_residues SATRLDVPVVRLPHGMDLPLPEYATAASAGMDLVAAVPAEVPLVIAPGAWALVPTGLALELPEGMEAQVRPRSGLALKFG VTVLNAPGTIDADYRGEVGVILINHGREPFTVSRGMRIAQMVIAGVQQITLVETGNLGETARGVGGFGSTGLDRTP
Specific function: This enzyme is involved in nucleotide metabolism:it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
COG id: COG0756
COG function: function code F; dUTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dUTPase family
Homologues:
Organism=Homo sapiens, GI70906444, Length=133, Percent_Identity=42.8571428571429, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI4503423, Length=133, Percent_Identity=42.8571428571429, Blast_Score=98, Evalue=3e-21, Organism=Homo sapiens, GI70906441, Length=133, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1790071, Length=149, Percent_Identity=41.6107382550336, Blast_Score=107, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71988561, Length=151, Percent_Identity=41.7218543046358, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6319729, Length=155, Percent_Identity=35.4838709677419, Blast_Score=92, Evalue=5e-20, Organism=Drosophila melanogaster, GI24583610, Length=154, Percent_Identity=40.2597402597403, Blast_Score=94, Evalue=3e-20, Organism=Drosophila melanogaster, GI19921126, Length=154, Percent_Identity=40.2597402597403, Blast_Score=94, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DUT_AZOC5 (A8IPW5)
Other databases:
- EMBL: AP009384 - RefSeq: YP_001523623.1 - ProteinModelPortal: A8IPW5 - SMR: A8IPW5 - GeneID: 5688970 - GenomeReviews: AP009384_GR - KEGG: azc:AZC_0707 - HOGENOM: HBG436079 - OMA: LDLRACI - ProtClustDB: PRK00601 - BioCyc: ACAU438753:AZC_0707-MONOMER - HAMAP: MF_00116 - InterPro: IPR008180 - InterPro: IPR008181 - TIGRFAMs: TIGR00576
Pfam domain/function: PF00692 dUTPase
EC number: =3.6.1.23
Molecular weight: Translated: 16233; Mature: 16102
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: BINDING 86-86
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATRLDVPVVRLPHGMDLPLPEYATAASAGMDLVAAVPAEVPLVIAPGAWALVPTGLAL CCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCEEEEECCCCCCEEECCCCCEEECCCEEE ELPEGMEAQVRPRSGLALKFGVTVLNAPGTIDADYRGEVGVILINHGREPFTVSRGMRIA ECCCCCCEEECCCCCEEEEECEEEEECCCCCCCCCCCCEEEEEEECCCCCEEHHCCCHHH QMVIAGVQQITLVETGNLGETARGVGGFGSTGLDRTP HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SATRLDVPVVRLPHGMDLPLPEYATAASAGMDLVAAVPAEVPLVIAPGAWALVPTGLAL CCCCCCCCEEECCCCCCCCCCCHHHHHHCCCEEEEECCCCCCEEECCCCCEEECCCEEE ELPEGMEAQVRPRSGLALKFGVTVLNAPGTIDADYRGEVGVILINHGREPFTVSRGMRIA ECCCCCCEEECCCCCEEEEECEEEEECCCCCCCCCCCCEEEEEEECCCCCEEHHCCCHHH QMVIAGVQQITLVETGNLGETARGVGGFGSTGLDRTP HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA