Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 158422241

GI number: 158422241

Start: 688834

End: 690054

Strand: Direct

Name: yddU [C]

Synonym: AZC_0617

Alternate gene names: 158422241

Gene position: 688834-690054 (Clockwise)

Preceding gene: 158422240

Following gene: 158422242

Centisome position: 12.83

GC content: 64.29

Gene sequence:

>1221_bases
ATGCCGCGCGCCCAGGCCGTGCTCGTTCTCGATGATGAACCGGAATTACGGGAAGATCTGGCTGAGCTTCTCGTGGGTGC
CGGTTTTTCGGCCGAAGGGCGGGGCGATGCCCGGAGCCTGACCGACGCCGAGTTCGGGGCCTTCGACGTGGTGATCCTCG
ACCTCGCCATGCCGGGAACGGACGGGCTCAGTGTCCTCGGCCGCCTCGCCCATGTGCCGCAGGCCCCCCGCATCATTTTC
ATTTCCGGACATGGCGAGGATGTGCTCCAGACGGCGGCCGCCGTGGCGCGCCGGGAGCACCTCCAGGTCGCGGGTGTTCT
GCGCAAGCCCTTCACGGCCGAGGATGTGCTGCGGCTGCTCGGTCAATCCTGGGTGCCGCTCGATTCCGGCGCGAGCATCG
CCTGGTCCGACGCCGACATCCGCTCGGCGCTCGCCGAAGCCATTGATGAACGCGCACTCTCCGTGGCGTTCCAGCCCAAG
GTGACCGCCAAGGGGCTGATTTTCGCCGGGGCGGAAGCGCTGCTGACCGGAGACCTGCCGCGGCTCGGATATGTCTCCCC
CGAAATCATCGTGCGGGCCGCCACCCGCGAGCCGGAACTGATCGGGGCGATGAGCCTCGAGGTGCTGCGGTGTTCTGCCG
CGGCGTGCCGGGCCTGGATCGATGCGGGCTGGGATGTGCCGGTGAGCGTTAATCTGCCTTTCGAGGTGCTGTGCCTGCCG
GACATTTCGGAACGGCTGCTGTCGCCGATCCACGAAGAGGGCCTCATGCCCCGGCATGTCATCTTCGAACTCACCGAAGA
TGCAATTTATGATTCCTCAAGTGACGTACTGGCAATCTTGGCGCGGTTGCGCCTCGCGGGATTCGGCCTGTCGCTGGATG
ACGTGGGGCGCCGGCAGAGCGGCTTGCTCCAGCTGGCCAATCTGCCGATCACGGAAGTGAAGATCGATCTCCAACTGCTC
GCTCAGGCACGAACCTGGAGCAAATCCCGCAGCGTGTTTGTGTCGGTGGCCGAACTCGGTCATCGTCTCGGATTGACGGT
CGTGGCGGAGGGCGTTGAAACGCGTGATGACCTTGTGCTCGTCCGCAGCCTTCCCGTGGATTATGTTCAAGGCTATCTCG
TGTCGAGAAAACAACATTTGCCGGATCTCCTTGCCATGCTGGCAGCCAGTTCATCCCGCGGGGCGCCCTTCGCTCCGGAT
CACGTGGTTCCGATATCATGA

Upstream 100 bases:

>100_bases
TTTTCTGTTTGTGAAGCCGGTTGATCCGGTGGTCGTGATGGAGGGAATTGAGCGTCTCCTTGCCGGCTGAGCTCCGGGGA
GGGCGCCAACAGGGGATAGA

Downstream 100 bases:

>100_bases
GCACCGAAAACTCCGTTCCGCGCGTTCTGCTGGTTGACGATGATCCGGATGTCCTCGCCGAACTCAGCGAGGGGCTTGAT
GCGCTGGGCCTGCCCTCGCT

Product: two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPRAQAVLVLDDEPELREDLAELLVGAGFSAEGRGDARSLTDAEFGAFDVVILDLAMPGTDGLSVLGRLAHVPQAPRIIF
ISGHGEDVLQTAAAVARREHLQVAGVLRKPFTAEDVLRLLGQSWVPLDSGASIAWSDADIRSALAEAIDERALSVAFQPK
VTAKGLIFAGAEALLTGDLPRLGYVSPEIIVRAATREPELIGAMSLEVLRCSAAACRAWIDAGWDVPVSVNLPFEVLCLP
DISERLLSPIHEEGLMPRHVIFELTEDAIYDSSSDVLAILARLRLAGFGLSLDDVGRRQSGLLQLANLPITEVKIDLQLL
AQARTWSKSRSVFVSVAELGHRLGLTVVAEGVETRDDLVLVRSLPVDYVQGYLVSRKQHLPDLLAMLAASSSRGAPFAPD
HVVPIS

Sequences:

>Translated_406_residues
MPRAQAVLVLDDEPELREDLAELLVGAGFSAEGRGDARSLTDAEFGAFDVVILDLAMPGTDGLSVLGRLAHVPQAPRIIF
ISGHGEDVLQTAAAVARREHLQVAGVLRKPFTAEDVLRLLGQSWVPLDSGASIAWSDADIRSALAEAIDERALSVAFQPK
VTAKGLIFAGAEALLTGDLPRLGYVSPEIIVRAATREPELIGAMSLEVLRCSAAACRAWIDAGWDVPVSVNLPFEVLCLP
DISERLLSPIHEEGLMPRHVIFELTEDAIYDSSSDVLAILARLRLAGFGLSLDDVGRRQSGLLQLANLPITEVKIDLQLL
AQARTWSKSRSVFVSVAELGHRLGLTVVAEGVETRDDLVLVRSLPVDYVQGYLVSRKQHLPDLLAMLAASSSRGAPFAPD
HVVPIS
>Mature_405_residues
PRAQAVLVLDDEPELREDLAELLVGAGFSAEGRGDARSLTDAEFGAFDVVILDLAMPGTDGLSVLGRLAHVPQAPRIIFI
SGHGEDVLQTAAAVARREHLQVAGVLRKPFTAEDVLRLLGQSWVPLDSGASIAWSDADIRSALAEAIDERALSVAFQPKV
TAKGLIFAGAEALLTGDLPRLGYVSPEIIVRAATREPELIGAMSLEVLRCSAAACRAWIDAGWDVPVSVNLPFEVLCLPD
ISERLLSPIHEEGLMPRHVIFELTEDAIYDSSSDVLAILARLRLAGFGLSLDDVGRRQSGLLQLANLPITEVKIDLQLLA
QARTWSKSRSVFVSVAELGHRLGLTVVAEGVETRDDLVLVRSLPVDYVQGYLVSRKQHLPDLLAMLAASSSRGAPFAPDH
VVPIS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=32.3770491803279, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=27.5423728813559, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=29.1845493562232, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787541, Length=242, Percent_Identity=26.4462809917355, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082096, Length=154, Percent_Identity=30.5194805194805, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=24.8062015503876, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI226510982, Length=241, Percent_Identity=28.6307053941909, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788502, Length=263, Percent_Identity=25.8555133079848, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081980, Length=284, Percent_Identity=27.112676056338, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=23.3050847457627, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 43594; Mature: 43462

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAQAVLVLDDEPELREDLAELLVGAGFSAEGRGDARSLTDAEFGAFDVVILDLAMPGT
CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
DGLSVLGRLAHVPQAPRIIFISGHGEDVLQTAAAVARREHLQVAGVLRKPFTAEDVLRLL
CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GQSWVPLDSGASIAWSDADIRSALAEAIDERALSVAFQPKVTAKGLIFAGAEALLTGDLP
CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCHHHEECCCC
RLGYVSPEIIVRAATREPELIGAMSLEVLRCSAAACRAWIDAGWDVPVSVNLPFEVLCLP
CCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECC
DISERLLSPIHEEGLMPRHVIFELTEDAIYDSSSDVLAILARLRLAGFGLSLDDVGRRQS
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHH
GLLQLANLPITEVKIDLQLLAQARTWSKSRSVFVSVAELGHRLGLTVVAEGVETRDDLVL
CCEECCCCCHHHEEHHHHHHHHHHHCCCCHHHEEEHHHHHHHCCHHEEECCCCCCCCEEE
VRSLPVDYVQGYLVSRKQHLPDLLAMLAASSSRGAPFAPDHVVPIS
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRAQAVLVLDDEPELREDLAELLVGAGFSAEGRGDARSLTDAEFGAFDVVILDLAMPGT
CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
DGLSVLGRLAHVPQAPRIIFISGHGEDVLQTAAAVARREHLQVAGVLRKPFTAEDVLRLL
CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GQSWVPLDSGASIAWSDADIRSALAEAIDERALSVAFQPKVTAKGLIFAGAEALLTGDLP
CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCHHHEECCCC
RLGYVSPEIIVRAATREPELIGAMSLEVLRCSAAACRAWIDAGWDVPVSVNLPFEVLCLP
CCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECC
DISERLLSPIHEEGLMPRHVIFELTEDAIYDSSSDVLAILARLRLAGFGLSLDDVGRRQS
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHH
GLLQLANLPITEVKIDLQLLAQARTWSKSRSVFVSVAELGHRLGLTVVAEGVETRDDLVL
CCEECCCCCHHHEEHHHHHHHHHHHCCCCHHHEEEHHHHHHHCCHHEEECCCCCCCCEEE
VRSLPVDYVQGYLVSRKQHLPDLLAMLAASSSRGAPFAPDHVVPIS
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]