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The map label for this gene is hupD [H]

Identifier: 158422225

GI number: 158422225

Start: 669406

End: 670032

Strand: Direct

Name: hupD [H]

Synonym: AZC_0601

Alternate gene names: 158422225

Gene position: 669406-670032 (Clockwise)

Preceding gene: 158422224

Following gene: 158422226

Centisome position: 12.47

GC content: 69.06

Gene sequence:

>627_bases
ATGGACGGCGAACACATCCTCGTGCTTGGCATCGGCAACATCCTGTGGGCGGACGAAGGCTTCGGCGTCCGCGTGGTGGA
AGCCCTCGATCGCGCCTTCACTTTCCCCGACCATGTGACGCTGCTCGATGGCGGCACGCAGGGCCTCTATCTCCTGCCCG
CGTTGGAAGAGGCGGATGTGGTGGTGATCCTCGATGCGGTGGATTACGGCCTGCCCCCCGGCACCCTCCATTGTCTGTCC
GATGGCGACGTTCCCGCCGTGCTCGGCGCGCGCAAGCTGAGCCTTCACCAGACCGGATTCCAGGAGGTGCTGGCGCTGCT
GCAACTGCGCGGCTGCCTGCCGCGCCATCTGCGCCTCGTGGGCGTCCAGCCCCATACGCTTGATGATTACGGTGGAGGGC
TGACCCCTCCGGTGGCGGCGCAGGTCGCCCCCGCCGTGACCGAGGTCTTGCGCCTCCTTACTGAAGAGTTCGACGTTCCG
GTGCGGCCGCGCGACAGCGAAAGCTCGGAGGGGCTCGTCACCGCCGCCGTGGCGCGTGCCGCTTATGAGGCGGGACGGCC
GAGCGCGCAGGACGCCTGCCGCATCGGCGACGCCCGCGTGCTCGCCCGCACCTTCGGCGAGGCCTGA

Upstream 100 bases:

>100_bases
CCTGCCTGCGACGTTCTGGCATGGCTCTTGAATTGGAGATTTTCCAAAGGGCGGCGCAGACCGCACCGTCGGAGGTCCCT
CAGGGAGAGAGGCGCGTCGC

Downstream 100 bases:

>100_bases
GCCCATGTGCGTCGGCCTGCCCATGCGCATCGAGAGCCGGAGCGGGCATCTTGCCGAATGCTCCGGCCCGGAAGGCTTTG
CGCGCGTCGATCTCGCCCTC

Product: hydrogen uptake protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MDGEHILVLGIGNILWADEGFGVRVVEALDRAFTFPDHVTLLDGGTQGLYLLPALEEADVVVILDAVDYGLPPGTLHCLS
DGDVPAVLGARKLSLHQTGFQEVLALLQLRGCLPRHLRLVGVQPHTLDDYGGGLTPPVAAQVAPAVTEVLRLLTEEFDVP
VRPRDSESSEGLVTAAVARAAYEAGRPSAQDACRIGDARVLARTFGEA

Sequences:

>Translated_208_residues
MDGEHILVLGIGNILWADEGFGVRVVEALDRAFTFPDHVTLLDGGTQGLYLLPALEEADVVVILDAVDYGLPPGTLHCLS
DGDVPAVLGARKLSLHQTGFQEVLALLQLRGCLPRHLRLVGVQPHTLDDYGGGLTPPVAAQVAPAVTEVLRLLTEEFDVP
VRPRDSESSEGLVTAAVARAAYEAGRPSAQDACRIGDARVLARTFGEA
>Mature_208_residues
MDGEHILVLGIGNILWADEGFGVRVVEALDRAFTFPDHVTLLDGGTQGLYLLPALEEADVVVILDAVDYGLPPGTLHCLS
DGDVPAVLGARKLSLHQTGFQEVLALLQLRGCLPRHLRLVGVQPHTLDDYGGGLTPPVAAQVAPAVTEVLRLLTEEFDVP
VRPRDSESSEGLVTAAVARAAYEAGRPSAQDACRIGDARVLARTFGEA

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1787209, Length=142, Percent_Identity=53.5211267605634, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789367, Length=162, Percent_Identity=46.2962962962963, Blast_Score=120, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 22061; Mature: 22061

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGEHILVLGIGNILWADEGFGVRVVEALDRAFTFPDHVTLLDGGTQGLYLLPALEEADV
CCCCEEEEEECCCEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCE
VVILDAVDYGLPPGTLHCLSDGDVPAVLGARKLSLHQTGFQEVLALLQLRGCLPRHLRLV
EEEEECHHCCCCCCEEEEECCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHCCCCHHEEEE
GVQPHTLDDYGGGLTPPVAAQVAPAVTEVLRLLTEEFDVPVRPRDSESSEGLVTAAVARA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
AYEAGRPSAQDACRIGDARVLARTFGEA
HHHCCCCCHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MDGEHILVLGIGNILWADEGFGVRVVEALDRAFTFPDHVTLLDGGTQGLYLLPALEEADV
CCCCEEEEEECCCEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCE
VVILDAVDYGLPPGTLHCLSDGDVPAVLGARKLSLHQTGFQEVLALLQLRGCLPRHLRLV
EEEEECHHCCCCCCEEEEECCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHCCCCHHEEEE
GVQPHTLDDYGGGLTPPVAAQVAPAVTEVLRLLTEEFDVPVRPRDSESSEGLVTAAVARA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
AYEAGRPSAQDACRIGDARVLARTFGEA
HHHCCCCCHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ni [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8125335 [H]