BacMap

Definition	Azorhizobium caulinodans ORS 571, complete genome.
Accession	NC_009937
Length	5,369,772

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The map label for this gene is yciK [H]

Identifier: 158422160

GI number: 158422160

Start: 594545

End: 595288

Strand: Direct

Name: yciK [H]

Synonym: AZC_0536

Alternate gene names: 158422160

Gene position: 594545-595288 (Clockwise)

Preceding gene: 158422159

Following gene: 158422161

Centisome position: 11.07

GC content: 70.3

Gene sequence:

>744_bases
ATGAGTGAGCGCCCGTTTGCCGACAAGATCGCCGTCGTCACCGGCGCCACGCGCGGCATCGGCGCGGCCGTGGCGCGGGC
GCTCGGTGCCGGTGGCGCCCATGTGGTGGCGCTCGGCCGGACGCAGGGCGCGCTGGAGGAACTGGACGACGCCATCACCG
CCGCCGGCGGCACCGCTACCCTCGTTCCCATGGACGTGACCGATTACGACGCGATCGACCGCCTCGGCGGCGCGCTCTAC
GAGCGCTATGGCCGGCTCGACGTCTTCGTCGGCAATGCCGGCTTCCTCGGGCCGCTCACCCCCATGCGCGACGTGGAGCT
GAAGGACTGGGACAAGGCGGTGAACATCAATCTCACCGCCAACTATCGCTTCATCCGCTCGCTCGATCCGCTGCTGCGCA
TGGCGCCGGCGGGGCGGGCGGTGTTCATCTCCTCCGGCGCGGCGCACAAGGGGCGGGCCTATTGGGGGCCCTATGCCATC
ACCAAGGCGGGCGTGGAGGCCATGGGCCGCACCTGGGCGGCGGAGACGGTGACGACCGCGCTCAAGGTGAACCTGTTCAA
TCCCGGTCCCATCCGCACCCTCATGCGCGCCAAGGCCTTCCCGGGCGAAGATCCGATGACGCTGCCGACCCCCGAAGAGG
CGGCGGAGGCCATCGTCGCCATGTGCCGCACGGATGTCGCGGAGACCGGCCGCCTCTATGATTTCCCCACCCGGAGCTGG
CAGGATTTCCGGTCGCCGGCGTGA

Upstream 100 bases:

>100_bases
ATCGCCGGGCGTGCCCGGCGGCAAGCTGACCCGCTGACAGACAGGCGCGGACCGGATAGACCGGTCCGCGCCTTTTGTGT
TTCCAGTCGAGGACATCGGA

Downstream 100 bases:

>100_bases
CAGGAAGCGGCTTTTGCGCCGCCCCGGCCTCGGGCGGCTTCCCTCCTGCGGGTGGGGGCTTTAGACAGGGTTGAGCGACT
ATTGAATTTCGTTGACCTGT

Product: NAD/NADP dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSERPFADKIAVVTGATRGIGAAVARALGAGGAHVVALGRTQGALEELDDAITAAGGTATLVPMDVTDYDAIDRLGGALY
ERYGRLDVFVGNAGFLGPLTPMRDVELKDWDKAVNINLTANYRFIRSLDPLLRMAPAGRAVFISSGAAHKGRAYWGPYAI
TKAGVEAMGRTWAAETVTTALKVNLFNPGPIRTLMRAKAFPGEDPMTLPTPEEAAEAIVAMCRTDVAETGRLYDFPTRSW
QDFRSPA

Sequences:

>Translated_247_residues
MSERPFADKIAVVTGATRGIGAAVARALGAGGAHVVALGRTQGALEELDDAITAAGGTATLVPMDVTDYDAIDRLGGALY
ERYGRLDVFVGNAGFLGPLTPMRDVELKDWDKAVNINLTANYRFIRSLDPLLRMAPAGRAVFISSGAAHKGRAYWGPYAI
TKAGVEAMGRTWAAETVTTALKVNLFNPGPIRTLMRAKAFPGEDPMTLPTPEEAAEAIVAMCRTDVAETGRLYDFPTRSW
QDFRSPA
>Mature_246_residues
SERPFADKIAVVTGATRGIGAAVARALGAGGAHVVALGRTQGALEELDDAITAAGGTATLVPMDVTDYDAIDRLGGALYE
RYGRLDVFVGNAGFLGPLTPMRDVELKDWDKAVNINLTANYRFIRSLDPLLRMAPAGRAVFISSGAAHKGRAYWGPYAIT
KAGVEAMGRTWAAETVTTALKVNLFNPGPIRTLMRAKAFPGEDPMTLPTPEEAAEAIVAMCRTDVAETGRLYDFPTRSWQ
DFRSPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=236, Percent_Identity=28.8135593220339, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=29.8429319371728, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI5031737, Length=201, Percent_Identity=28.3582089552239, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI109715829, Length=234, Percent_Identity=29.4871794871795, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=28.7234042553192, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=31.0679611650485, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI66933014, Length=186, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI223718074, Length=250, Percent_Identity=25.2, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723750, Length=193, Percent_Identity=27.979274611399, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=25.3112033195021, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI59889578, Length=168, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19743808, Length=194, Percent_Identity=31.4432989690722, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=195, Percent_Identity=30.2564102564103, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787526, Length=209, Percent_Identity=36.3636363636364, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=30.7291666666667, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082100, Length=236, Percent_Identity=31.3559322033898, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787820, Length=220, Percent_Identity=27.7272727272727, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790717, Length=202, Percent_Identity=27.2277227722772, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=27.7173913043478, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367175, Length=227, Percent_Identity=29.5154185022026, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789208, Length=194, Percent_Identity=25.7731958762887, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=194, Percent_Identity=27.8350515463918, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=206, Percent_Identity=29.6116504854369, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=230, Percent_Identity=27.8260869565217, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=195, Percent_Identity=30.2564102564103, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=193, Percent_Identity=27.4611398963731, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=28.7179487179487, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=29.7435897435897, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=248, Percent_Identity=30.241935483871, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=31.219512195122, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=31.5, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=239, Percent_Identity=28.4518828451883, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=246, Percent_Identity=25.609756097561, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=202, Percent_Identity=29.2079207920792, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=201, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=206, Percent_Identity=27.6699029126214, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=219, Percent_Identity=28.310502283105, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=201, Percent_Identity=26.3681592039801, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=195, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=209, Percent_Identity=30.1435406698565, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=206, Percent_Identity=26.2135922330097, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=34.5549738219895, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=32.4742268041237, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=32.8042328042328, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21355319, Length=229, Percent_Identity=27.9475982532751, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=227, Percent_Identity=30.8370044052863, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21356301, Length=229, Percent_Identity=26.6375545851528, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26360; Mature: 26229

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERPFADKIAVVTGATRGIGAAVARALGAGGAHVVALGRTQGALEELDDAITAAGGTAT
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEE
LVPMDVTDYDAIDRLGGALYERYGRLDVFVGNAGFLGPLTPMRDVELKDWDKAVNINLTA
EEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
NYRFIRSLDPLLRMAPAGRAVFISSGAAHKGRAYWGPYAITKAGVEAMGRTWAAETVTTA
CCHHHHHHCHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHCCHHHHHHHEEE
LKVNLFNPGPIRTLMRAKAFPGEDPMTLPTPEEAAEAIVAMCRTDVAETGRLYDFPTRSW
EEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCH
QDFRSPA
HHHCCCC
>Mature Secondary Structure 
SERPFADKIAVVTGATRGIGAAVARALGAGGAHVVALGRTQGALEELDDAITAAGGTAT
CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEE
LVPMDVTDYDAIDRLGGALYERYGRLDVFVGNAGFLGPLTPMRDVELKDWDKAVNINLTA
EEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
NYRFIRSLDPLLRMAPAGRAVFISSGAAHKGRAYWGPYAITKAGVEAMGRTWAAETVTTA
CCHHHHHHCHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHCCHHHHHHHEEE
LKVNLFNPGPIRTLMRAKAFPGEDPMTLPTPEEAAEAIVAMCRTDVAETGRLYDFPTRSW
EEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCH
QDFRSPA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]