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The map label for this gene is radA [H]

Identifier: 158422157

GI number: 158422157

Start: 590635

End: 592050

Strand: Direct

Name: radA [H]

Synonym: AZC_0533

Alternate gene names: 158422157

Gene position: 590635-592050 (Clockwise)

Preceding gene: 158422155

Following gene: 158422158

Centisome position: 11.0

GC content: 70.41

Gene sequence:

>1416_bases
ATGGCGAAACGCGACCTGTCCTATGTCTGCCAGTCCTGCGGGGCGGTCTATAACCGCTGGCAGGGCAAGTGCGATGCCTG
CGGCGGCTGGAACACCATCTCGGAAGAGACGAACCTCGCCGCCACCGTGCCTGCCGCCCAGCGCGCGGGCCGCAAGGGCC
GGGCGGTGCCGCTGGAGACGCTGCACGGCGAGGCCAAGCCTGCGCCCCGCCTTGTCTCCGGCATCGGCGAACTGGACCGG
GTGGCGGGCGGGGGCTTCGTGCCCGGCTCCATCGTCCTGCTGGGCGGGGATCCCGGCATCGGCAAGTCCACGCTGCTCGT
CCAGGCGTCCGCCGCGCTCGCAAAGGCCGGGCACCGCGTTATCTATGTGTCTGGCGAAGAGGCGGTGGATCAGGTGCGCA
TGCGCGCCGGCCGGCTGGGTCTCGCCCAGGCGCCCGTGGCGCTGGCCGCCGAGACCAATGCGGAGAACATCCTCGCCACC
TTCTCCGCCGGGGCGGCGGTGCAGTTCGTGGTGATCGATTCCATCCAGACCCTGTGGAGCGATTCCGTGGAATCCGCCCC
CGGCACGGTCACGCAGGTGCGCACCTCCGCCCAGTTGCTTGTGCGCTATGCCAAGCAGAGCGGGGCGGCGGTGATCCTTG
TCGGCCACGTGACCAAGGACGGGCAGATCGCCGGTCCCCGCGTGGTGGAGCACATGGTGGACGCGGTCTTCTCCTTCGAG
GGCGACGGCGCCAACCAGTTCCGCATCCTGCGCGCCCAGAAGAACCGCTTCGGGCCGACGGACGAGATCGGCGTCTTCGA
GATGACCGGCACCGGCCTCTCGCAGGTGCCAAACCCCTCCGAACTCTTCCTTTCCCATCGCGATGCCGGGGCGCCCGGCA
CGGCGGTGTTCGCCGGCATGGAGGGCACGCGCCCGCTGCTCATGGAGATCCAGGCTCTGGTCGCCCCCTCCAGCCTCGGC
ACGCCGCGCCGTGCGGTCGTGGGCTGGGATTCGGCGCGCCTTGCCATGGTGCTCGCGGTGCTGGACGCCCGCTGCGGCGT
GCGGCTCGGGGGACATGACGTCTATTTGAACGTGGCCGGCGGCCTGCGCATCAGCGAGCCGGCGGCGGACATTGCCGTTG
CGGCGGCGCTGGTCTCTTCCCTTACGGGCGCGCCTTTGCCGCCGGATGCTGTGTTCTTTGGGGAAGTTAGCCTCACGGGC
GCGGTGCGGCAGGTCTCCCAGGCGGCGGCCCGCCTCAAGGAGGCGGCCAAGCTCGGCTTCAACAAGGTGGTGATGCCCCA
GCTTGCCGACGGCAGCGCCAGCGGGCTCGAAGTGGACACCATCTCCTCCCTCGCCGGCCTCGTGGCCGGGATCGCCGCCC
GCGCTCCGCGCAGAGCAGCGATGCCCAAGCCCGCGATGTCGGATGAAGAGGGATGA

Upstream 100 bases:

>100_bases
TGCCGCCGGCTCACGGGCGCGTGCTCTTTCTTTAGGTCAGAGGCCGATCCACCGAGCGGATGGATTCAATCCGCTCGGAT
CGCGCTCTAGGCGAGGTGTG

Downstream 100 bases:

>100_bases
TGACGGCGCCCCGCACGCCCGCTATACGTCGCCGCTCACGGCGCTCCGCCATTTTCCCACCGACCGCCGGCCAGAGCCGA
CGCGGCCGCACTGACGGATC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MAKRDLSYVCQSCGAVYNRWQGKCDACGGWNTISEETNLAATVPAAQRAGRKGRAVPLETLHGEAKPAPRLVSGIGELDR
VAGGGFVPGSIVLLGGDPGIGKSTLLVQASAALAKAGHRVIYVSGEEAVDQVRMRAGRLGLAQAPVALAAETNAENILAT
FSAGAAVQFVVIDSIQTLWSDSVESAPGTVTQVRTSAQLLVRYAKQSGAAVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
GDGANQFRILRAQKNRFGPTDEIGVFEMTGTGLSQVPNPSELFLSHRDAGAPGTAVFAGMEGTRPLLMEIQALVAPSSLG
TPRRAVVGWDSARLAMVLAVLDARCGVRLGGHDVYLNVAGGLRISEPAADIAVAAALVSSLTGAPLPPDAVFFGEVSLTG
AVRQVSQAAARLKEAAKLGFNKVVMPQLADGSASGLEVDTISSLAGLVAGIAARAPRRAAMPKPAMSDEEG

Sequences:

>Translated_471_residues
MAKRDLSYVCQSCGAVYNRWQGKCDACGGWNTISEETNLAATVPAAQRAGRKGRAVPLETLHGEAKPAPRLVSGIGELDR
VAGGGFVPGSIVLLGGDPGIGKSTLLVQASAALAKAGHRVIYVSGEEAVDQVRMRAGRLGLAQAPVALAAETNAENILAT
FSAGAAVQFVVIDSIQTLWSDSVESAPGTVTQVRTSAQLLVRYAKQSGAAVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
GDGANQFRILRAQKNRFGPTDEIGVFEMTGTGLSQVPNPSELFLSHRDAGAPGTAVFAGMEGTRPLLMEIQALVAPSSLG
TPRRAVVGWDSARLAMVLAVLDARCGVRLGGHDVYLNVAGGLRISEPAADIAVAAALVSSLTGAPLPPDAVFFGEVSLTG
AVRQVSQAAARLKEAAKLGFNKVVMPQLADGSASGLEVDTISSLAGLVAGIAARAPRRAAMPKPAMSDEEG
>Mature_470_residues
AKRDLSYVCQSCGAVYNRWQGKCDACGGWNTISEETNLAATVPAAQRAGRKGRAVPLETLHGEAKPAPRLVSGIGELDRV
AGGGFVPGSIVLLGGDPGIGKSTLLVQASAALAKAGHRVIYVSGEEAVDQVRMRAGRLGLAQAPVALAAETNAENILATF
SAGAAVQFVVIDSIQTLWSDSVESAPGTVTQVRTSAQLLVRYAKQSGAAVILVGHVTKDGQIAGPRVVEHMVDAVFSFEG
DGANQFRILRAQKNRFGPTDEIGVFEMTGTGLSQVPNPSELFLSHRDAGAPGTAVFAGMEGTRPLLMEIQALVAPSSLGT
PRRAVVGWDSARLAMVLAVLDARCGVRLGGHDVYLNVAGGLRISEPAADIAVAAALVSSLTGAPLPPDAVFFGEVSLTGA
VRQVSQAAARLKEAAKLGFNKVVMPQLADGSASGLEVDTISSLAGLVAGIAARAPRRAAMPKPAMSDEEG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=426, Percent_Identity=46.9483568075117, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 48513; Mature: 48382

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRDLSYVCQSCGAVYNRWQGKCDACGGWNTISEETNLAATVPAAQRAGRKGRAVPLET
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCCCCCHHH
LHGEAKPAPRLVSGIGELDRVAGGGFVPGSIVLLGGDPGIGKSTLLVQASAALAKAGHRV
HCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHHHCCCEE
IYVSGEEAVDQVRMRAGRLGLAQAPVALAAETNAENILATFSAGAAVQFVVIDSIQTLWS
EEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHC
DSVESAPGTVTQVRTSAQLLVRYAKQSGAAVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC
GDGANQFRILRAQKNRFGPTDEIGVFEMTGTGLSQVPNPSELFLSHRDAGAPGTAVFAGM
CCCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCHHHHHEECCCCCCCCCEEEECC
EGTRPLLMEIQALVAPSSLGTPRRAVVGWDSARLAMVLAVLDARCGVRLGGHDVYLNVAG
CCCCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEECCCEEEEEEEC
GLRISEPAADIAVAAALVSSLTGAPLPPDAVFFGEVSLTGAVRQVSQAAARLKEAAKLGF
CCEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECEEHHHHHHHHHHHHHHHHHHHHCCC
NKVVMPQLADGSASGLEVDTISSLAGLVAGIAARAPRRAAMPKPAMSDEEG
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKRDLSYVCQSCGAVYNRWQGKCDACGGWNTISEETNLAATVPAAQRAGRKGRAVPLET
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCCCCCHHH
LHGEAKPAPRLVSGIGELDRVAGGGFVPGSIVLLGGDPGIGKSTLLVQASAALAKAGHRV
HCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHHHCCCEE
IYVSGEEAVDQVRMRAGRLGLAQAPVALAAETNAENILATFSAGAAVQFVVIDSIQTLWS
EEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHC
DSVESAPGTVTQVRTSAQLLVRYAKQSGAAVILVGHVTKDGQIAGPRVVEHMVDAVFSFE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC
GDGANQFRILRAQKNRFGPTDEIGVFEMTGTGLSQVPNPSELFLSHRDAGAPGTAVFAGM
CCCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCHHHHHEECCCCCCCCCEEEECC
EGTRPLLMEIQALVAPSSLGTPRRAVVGWDSARLAMVLAVLDARCGVRLGGHDVYLNVAG
CCCCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEECCCEEEEEEEC
GLRISEPAADIAVAAALVSSLTGAPLPPDAVFFGEVSLTGAVRQVSQAAARLKEAAKLGF
CCEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECEEHHHHHHHHHHHHHHHHHHHHCCC
NKVVMPQLADGSASGLEVDTISSLAGLVAGIAARAPRRAAMPKPAMSDEEG
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA