| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is merR [C]
Identifier: 158422135
GI number: 158422135
Start: 568385
End: 568828
Strand: Reverse
Name: merR [C]
Synonym: AZC_0511
Alternate gene names: 158422135
Gene position: 568828-568385 (Counterclockwise)
Preceding gene: 158422140
Following gene: 158422129
Centisome position: 10.59
GC content: 68.02
Gene sequence:
>444_bases GTGACGCAACTGACGGAGAGTGCAATGGACGTTTCCAATTTCGATGCGCGCAGCCAGGTTTCCGTTCCCGGCCGGACCTA TGCTGCCGAGGACGTCTATACGATCGGCGATCTGGCCCGCGAGTTCGGCATCACCCTGCGTGCCCTGCGCTTCTATGAAG ACAAGGGCCTCCTCTCTCCGCGTCGCGAAGGCCTTGCCCGCCTCTACTCTCCGGCGGACCGCGAGCGCCTCACCGTTATC CTGAAGGGCAAGCGCCTCGGCTTCACCCTTGCCGAGATCCGCGCCCTGGTCGCCGCCCACGAGGGCCAGAGCGGCAGCGA CCTCGCCCTGACCCGTGACCGCTGCCTGACCCAGCTCGGCCAGCTCGAGCGTCAGCGCACCGAGATCGAGGCTGCCATCG CCGAGCTGCGCGAGACCGCCGACCGTCTCGCCGCCGCGGCCTGA
Upstream 100 bases:
>100_bases CCCGTAGCGGGACAGATCGGCTTACCCATCATGCCGGGGTGCACATTGAAGCCCGGCACGGAATGCGCTTTCCGCTCTCT GAGCCATCGCACTGCCGGGC
Downstream 100 bases:
>100_bases ACACTCCACCAGCCCAAAAAGAAACCCGGCCGCGTGGCCGGGTTTTTTTGTCTCCGAACGGGAAAGGGAGGCAGCGCCTC CCACGCCTCAGGCGCTGAGC
Product: regulatory protein
Products: NA
Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; Transcriptional Regulator Merr Family; MerR-Family Transcriptional Regulator; Mercuric Resistance Operon Regulatory Protein MerR; Mercuric Resistance Operon Regulatory Protein; Regulatory Protein MerR; HTH-Type Transcriptional Regulator; Regulatory Gene Of GnyRDBHAL Cluster GnyR; Transcriptional Regulatory Protein MerR Family; Zinc-Responsive Transcriptional Regulator; MerR Family Regulatory Family; Regulatory Protein; Transcription Regulator Protein; Transcriptional Regulator Protein
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MTQLTESAMDVSNFDARSQVSVPGRTYAAEDVYTIGDLAREFGITLRALRFYEDKGLLSPRREGLARLYSPADRERLTVI LKGKRLGFTLAEIRALVAAHEGQSGSDLALTRDRCLTQLGQLERQRTEIEAAIAELRETADRLAAAA
Sequences:
>Translated_147_residues MTQLTESAMDVSNFDARSQVSVPGRTYAAEDVYTIGDLAREFGITLRALRFYEDKGLLSPRREGLARLYSPADRERLTVI LKGKRLGFTLAEIRALVAAHEGQSGSDLALTRDRCLTQLGQLERQRTEIEAAIAELRETADRLAAAA >Mature_146_residues TQLTESAMDVSNFDARSQVSVPGRTYAAEDVYTIGDLAREFGITLRALRFYEDKGLLSPRREGLARLYSPADRERLTVIL KGKRLGFTLAEIRALVAAHEGQSGSDLALTRDRCLTQLGQLERQRTEIEAAIAELRETADRLAAAA
Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]
COG id: COG0789
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16256; Mature: 16124
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS50937 HTH_MERR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLTESAMDVSNFDARSQVSVPGRTYAAEDVYTIGDLAREFGITLRALRFYEDKGLLSP CCCCHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH RREGLARLYSPADRERLTVILKGKRLGFTLAEIRALVAAHEGQSGSDLALTRDRCLTQLG HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QLERQRTEIEAAIAELRETADRLAAAA HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQLTESAMDVSNFDARSQVSVPGRTYAAEDVYTIGDLAREFGITLRALRFYEDKGLLSP CCCHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH RREGLARLYSPADRERLTVILKGKRLGFTLAEIRALVAAHEGQSGSDLALTRDRCLTQLG HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QLERQRTEIEAAIAELRETADRLAAAA HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA