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The map label for this gene is lysR [H]

Identifier: 158422075

GI number: 158422075

Start: 504347

End: 505264

Strand: Reverse

Name: lysR [H]

Synonym: AZC_0451

Alternate gene names: 158422075

Gene position: 505264-504347 (Counterclockwise)

Preceding gene: 158422078

Following gene: 158422072

Centisome position: 9.41

GC content: 68.63

Gene sequence:

>918_bases
TTGATTGATTTGAGCCCAGGTTTTTTCAATGCTCATAGCATGAGCATCAAGAATCTCGATCTCGATCTCCTGCGCAGCTT
CGCGGCGGTGGCGGAGCTGGGCTCCATCTCCGCCGCCGCCCAGAGGATCGGCCGCACCCAGTCCGCGGTGAGCCTCCAGA
TGGACCGGCTCGCCGAGCAGCTCGGCTTTCCCGTGGTGGAGCGCAAGGGGCGCGGCGTCGCGCTCACGCCGCGCGGGGCC
GCCTTTCTCGACGACGCCCGCCGGCTGCTCGACCTGAATGACCGCGTGCTCGGCCATCACCTGCGCAGCGGCTTTTCCGA
ACCGCTGCGGCTCGGCTTCGTGCAGGATGTGGCGGAATCGGCGCTCCAGCGCATTCTGGCCCGGCTCGGCAGCCTCTTTC
CCGGCGCCCCCATCACCGTGCGGGTGTGCTCGACCAACACCATGATCGAGAAGCTGCGGATCGGCGAGCTGGACCTTGCC
GCCGGCTATCGCGTGGAGACGGACGTGCCCACGCGGCTCATCATGCGCGAGCAGATGTGCTGGATCGGCGCCCGCAGCCT
GCGGCTCAACCCGGAGGAACCGGTGCCCCTTCTGATGTTCGAGAGCCCCTGCATCTTCCGCAGCGCCGCCATCTCGGCAC
TCACGGCGGCGGGACGGTCCTTCCGCATCGCCCTCACCAGCCCCAGCCTGCCGGGCGTCATGGCGGCCGTGGGTGCCGGT
CTCGGCATCACCCTGCGCTCGGCTCGTTCGCTGCGGCCGGACCTGATGACCATCGGCGACCTCGGCACGCAGCCGCTGCC
GCATTTCGAGTATGCGCTCTACAGCCGGGCGGAGAACCGCCTGCCGGCCCTCGACCAGATCGAACAGGTGATCGAGGAGG
AACTGCGCCGCGAGCGGCCGCTCTTCGCGGTGGCGTGA

Upstream 100 bases:

>100_bases
CGGAGGTGGCAGCGGGGGCTGAGAGCTTCACATTGAGAATGGGCATGGGTGCCTCCTTCAGGGATGGCGCACCCTACCGC
CCGACGTAACATGAGAAAAA

Downstream 100 bases:

>100_bases
GGGCGCGGACGAACCGCCCGCGCCCTCCCCCGTTCAGTGCTGGTGGCCCATGTTGCCCATCCCGCCGGCGGCGGGGGCCG
TCGCGCCGATGCCGCGCACG

Product: transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MIDLSPGFFNAHSMSIKNLDLDLLRSFAAVAELGSISAAAQRIGRTQSAVSLQMDRLAEQLGFPVVERKGRGVALTPRGA
AFLDDARRLLDLNDRVLGHHLRSGFSEPLRLGFVQDVAESALQRILARLGSLFPGAPITVRVCSTNTMIEKLRIGELDLA
AGYRVETDVPTRLIMREQMCWIGARSLRLNPEEPVPLLMFESPCIFRSAAISALTAAGRSFRIALTSPSLPGVMAAVGAG
LGITLRSARSLRPDLMTIGDLGTQPLPHFEYALYSRAENRLPALDQIEQVIEEELRRERPLFAVA

Sequences:

>Translated_305_residues
MIDLSPGFFNAHSMSIKNLDLDLLRSFAAVAELGSISAAAQRIGRTQSAVSLQMDRLAEQLGFPVVERKGRGVALTPRGA
AFLDDARRLLDLNDRVLGHHLRSGFSEPLRLGFVQDVAESALQRILARLGSLFPGAPITVRVCSTNTMIEKLRIGELDLA
AGYRVETDVPTRLIMREQMCWIGARSLRLNPEEPVPLLMFESPCIFRSAAISALTAAGRSFRIALTSPSLPGVMAAVGAG
LGITLRSARSLRPDLMTIGDLGTQPLPHFEYALYSRAENRLPALDQIEQVIEEELRRERPLFAVA
>Mature_305_residues
MIDLSPGFFNAHSMSIKNLDLDLLRSFAAVAELGSISAAAQRIGRTQSAVSLQMDRLAEQLGFPVVERKGRGVALTPRGA
AFLDDARRLLDLNDRVLGHHLRSGFSEPLRLGFVQDVAESALQRILARLGSLFPGAPITVRVCSTNTMIEKLRIGELDLA
AGYRVETDVPTRLIMREQMCWIGARSLRLNPEEPVPLLMFESPCIFRSAAISALTAAGRSFRIALTSPSLPGVMAAVGAG
LGITLRSARSLRPDLMTIGDLGTQPLPHFEYALYSRAENRLPALDQIEQVIEEELRRERPLFAVA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=282, Percent_Identity=35.8156028368794, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790399, Length=253, Percent_Identity=25.296442687747, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33354; Mature: 33354

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLSPGFFNAHSMSIKNLDLDLLRSFAAVAELGSISAAAQRIGRTQSAVSLQMDRLAEQ
CCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LGFPVVERKGRGVALTPRGAAFLDDARRLLDLNDRVLGHHLRSGFSEPLRLGFVQDVAES
HCCCHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
ALQRILARLGSLFPGAPITVRVCSTNTMIEKLRIGELDLAAGYRVETDVPTRLIMREQMC
HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCEEECCCCEECCCCCHHHHHHHHHH
WIGARSLRLNPEEPVPLLMFESPCIFRSAAISALTAAGRSFRIALTSPSLPGVMAAVGAG
HHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCC
LGITLRSARSLRPDLMTIGDLGTQPLPHFEYALYSRAENRLPALDQIEQVIEEELRRERP
CCEEEHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
LFAVA
CEECC
>Mature Secondary Structure
MIDLSPGFFNAHSMSIKNLDLDLLRSFAAVAELGSISAAAQRIGRTQSAVSLQMDRLAEQ
CCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LGFPVVERKGRGVALTPRGAAFLDDARRLLDLNDRVLGHHLRSGFSEPLRLGFVQDVAES
HCCCHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
ALQRILARLGSLFPGAPITVRVCSTNTMIEKLRIGELDLAAGYRVETDVPTRLIMREQMC
HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCEEECCCCEECCCCCHHHHHHHHHH
WIGARSLRLNPEEPVPLLMFESPCIFRSAAISALTAAGRSFRIALTSPSLPGVMAAVGAG
HHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCC
LGITLRSARSLRPDLMTIGDLGTQPLPHFEYALYSRAENRLPALDQIEQVIEEELRRERP
CCEEEHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
LFAVA
CEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]