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The map label for this gene is ycbB [H]

Identifier: 158422063

GI number: 158422063

Start: 493225

End: 495174

Strand: Direct

Name: ycbB [H]

Synonym: AZC_0439

Alternate gene names: 158422063

Gene position: 493225-495174 (Clockwise)

Preceding gene: 158422062

Following gene: 158422064

Centisome position: 9.19

GC content: 70.67

Gene sequence:

>1950_bases
TTGGGTCAGATGAAGCGTCCCTTGCTGCGTCCTCTTCCGTGGCCGTCCGCCGGCCGCGTCTTCGCCGGCTTGATGCTCGG
TGCGGTGTTCGCCGGCGCCGGCCTGCCGGTGCTGATGCCGGCCGACCCGGCCGTCGCCTCCACCGATGACACCTCCCCCG
CGAGCCGTGCGGCTGCGGCCTCCGAGGCCAATGGCATCGCCTGGCCGCCGGCCCATGTGGAGCCGGGCCACGTGTCCACG
CCGGCCGCGAAGCAGGCGACCCCCGCCGCTCCCGTAACGCCGGCGCCCGCCGCGACGCAGGCTGCAACCCCCGCTCCGTC
CGCCCCCGCGGCGCCGGCCAATGCCGCTGCCACTCCGGCCGCGCCTGCGGTCGCAACCCCGTCCACCACGGCGGAAGCCC
CCAAGCTCAATCCCTTGGCTGAGCAGGTGCGCCAGATCCTCGCCGTTCCCGCGCTTGAGGGGCTCGGCATCACCAAGCGC
GAGCAGGAGGCCATCCAGTCCTTCTATGCCGCGCGTCAGGACGAGCCGGTCTTCGTCACCGACAAGGGCCTGAATGCCGT
CGGCAAGGGCGTCGAGGCGCGTTTCGCCGCCGCTGCCGAGGATGGCCTCGATCCGGCCGCCTATCCGGTGCCCAAGCTCG
CGGCCCAGCCGGACCTGCCGGCGCTTGCCCGCGCCGAGGTGCGTCTCGCGGCCTCGGCCCTCCTTTACGCGCGCCACGCC
CAGGCCGGCCGCTTCGATCCCTCGCGGATCTCGCCCCAGCTCACGCCGCTGCGCACCTTCCCCGATCCGGTGACGGTGCT
CTCCGGCCTCGTCGACGCCAAGGACGCCAGCGCGGTGCTGGCCGCCTACAACCCCACCCATGCCGGTTACAAGGCCCTGA
AGGCGAAGCTCGCGCTGGCCGACAGCCACGCCGGCCCCGCGCCCGTGCGGGTGCCCGGCGGCCCGACGCTGCGTCCCGGT
GACATGGATGCCCGCGTGCCGGCGCTGCGCGCTCGCCTCGGCCTCAAGTCCGCGACCGCCAGCGACCGCCTCTATGACGC
CGATCTCGCCCGCGCCGTCGCCGCCTTCCAGGGCGCCTCGGGCCTCAATGCGGACGGCGTCGTCGGCCCCTCGACGCTGG
AAGTGCTGAACCGGGTGGAAAACCCGGCCGAGCGCCGCGCCGACATCATCGCGAATATGGAGCGCTGGCGCTGGCTGCCG
CGCGATCTCGGCTCCGTCCATGTGATGGTGAACATTCCCGAGTTCGTGGTGCGCGTGGTGGATGACGGCAAGACCATCCA
CCAGACCCGCGTGGTGGTGGGCAAGCCGGAGAACCAGACGCCGCTGCTGACGCACGACATGGAATATGTCGTGCTGAACC
CCTACTGGAACATCCCGCCCTCCATCGCCCGCAAGGAGATGCTGCCGAACCTCCAGCGCGATCCCTATTTCCTCGCCCGC
CAGGGCATGGAGGTGGTGAAGAACGGACGCGTGGTGGACCCCGGCACGGTGAACTGGGCGCAGGGCACGGGCGGCTATTC
CTTCCGCCAGCCCCCCGGCGAGCGCAATGCGCTCGGCCGCATCAAGTTCATGTTCCCGAACGACCACTCGGTCTATCTGC
ACGACACGCCGTCCAAGGCGCTGTTCGCCAACGACCGGCGCGCCTACAGCCACGGCTGCATCCGCGTGCAGGATCCGCTG
AAGTTCGCCGAGGTCATCTTCAACATCGGCATGCCCGGACAGGGCTGGACCGATGAGAAGATCGGCAAGATGCTCGGCGG
CGCGGAGCGCTATCTCACGCTCAAGCAGCGCATTCCCGTTCACCTCGTCTATTTCACCACCTTCGTGGATGACAGCGGCC
GCCTCGTCTCGCGCGAGGATGTCTATGGCACCAACGCCAAGGTGAAGGAGGCCCTCGGCCTCGACGGCGAGCAGAAGGTG
GCCGGCCGCGCGGTGCCCGTCCCCCGCTGA

Upstream 100 bases:

>100_bases
CGCTGCGCGGGTCGCACCGTCAGGTCAGGCCATGTCAGGCGAACCGCATCCGGCGCTGAGGCGCAGGGTGGTGGGCAAAG
TTGGGGCAGGCTGAGAAAAG

Downstream 100 bases:

>100_bases
GGGCGCTTCTAGCCGCACTGATCCCGATGTCCGAAAGGGGCCGCCCGCGTGCGGCCCCTTTTGCTTTTGAAGCCTGCGCG
CTCGGCTGAAAAGCCGTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 648

Protein sequence:

>649_residues
MGQMKRPLLRPLPWPSAGRVFAGLMLGAVFAGAGLPVLMPADPAVASTDDTSPASRAAAASEANGIAWPPAHVEPGHVST
PAAKQATPAAPVTPAPAATQAATPAPSAPAAPANAAATPAAPAVATPSTTAEAPKLNPLAEQVRQILAVPALEGLGITKR
EQEAIQSFYAARQDEPVFVTDKGLNAVGKGVEARFAAAAEDGLDPAAYPVPKLAAQPDLPALARAEVRLAASALLYARHA
QAGRFDPSRISPQLTPLRTFPDPVTVLSGLVDAKDASAVLAAYNPTHAGYKALKAKLALADSHAGPAPVRVPGGPTLRPG
DMDARVPALRARLGLKSATASDRLYDADLARAVAAFQGASGLNADGVVGPSTLEVLNRVENPAERRADIIANMERWRWLP
RDLGSVHVMVNIPEFVVRVVDDGKTIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLAR
QGMEVVKNGRVVDPGTVNWAQGTGGYSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKALFANDRRAYSHGCIRVQDPL
KFAEVIFNIGMPGQGWTDEKIGKMLGGAERYLTLKQRIPVHLVYFTTFVDDSGRLVSREDVYGTNAKVKEALGLDGEQKV
AGRAVPVPR

Sequences:

>Translated_649_residues
MGQMKRPLLRPLPWPSAGRVFAGLMLGAVFAGAGLPVLMPADPAVASTDDTSPASRAAAASEANGIAWPPAHVEPGHVST
PAAKQATPAAPVTPAPAATQAATPAPSAPAAPANAAATPAAPAVATPSTTAEAPKLNPLAEQVRQILAVPALEGLGITKR
EQEAIQSFYAARQDEPVFVTDKGLNAVGKGVEARFAAAAEDGLDPAAYPVPKLAAQPDLPALARAEVRLAASALLYARHA
QAGRFDPSRISPQLTPLRTFPDPVTVLSGLVDAKDASAVLAAYNPTHAGYKALKAKLALADSHAGPAPVRVPGGPTLRPG
DMDARVPALRARLGLKSATASDRLYDADLARAVAAFQGASGLNADGVVGPSTLEVLNRVENPAERRADIIANMERWRWLP
RDLGSVHVMVNIPEFVVRVVDDGKTIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLAR
QGMEVVKNGRVVDPGTVNWAQGTGGYSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKALFANDRRAYSHGCIRVQDPL
KFAEVIFNIGMPGQGWTDEKIGKMLGGAERYLTLKQRIPVHLVYFTTFVDDSGRLVSREDVYGTNAKVKEALGLDGEQKV
AGRAVPVPR
>Mature_648_residues
GQMKRPLLRPLPWPSAGRVFAGLMLGAVFAGAGLPVLMPADPAVASTDDTSPASRAAAASEANGIAWPPAHVEPGHVSTP
AAKQATPAAPVTPAPAATQAATPAPSAPAAPANAAATPAAPAVATPSTTAEAPKLNPLAEQVRQILAVPALEGLGITKRE
QEAIQSFYAARQDEPVFVTDKGLNAVGKGVEARFAAAAEDGLDPAAYPVPKLAAQPDLPALARAEVRLAASALLYARHAQ
AGRFDPSRISPQLTPLRTFPDPVTVLSGLVDAKDASAVLAAYNPTHAGYKALKAKLALADSHAGPAPVRVPGGPTLRPGD
MDARVPALRARLGLKSATASDRLYDADLARAVAAFQGASGLNADGVVGPSTLEVLNRVENPAERRADIIANMERWRWLPR
DLGSVHVMVNIPEFVVRVVDDGKTIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLARQ
GMEVVKNGRVVDPGTVNWAQGTGGYSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKALFANDRRAYSHGCIRVQDPLK
FAEVIFNIGMPGQGWTDEKIGKMLGGAERYLTLKQRIPVHLVYFTTFVDDSGRLVSREDVYGTNAKVKEALGLDGEQKVA
GRAVPVPR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=515, Percent_Identity=32.4271844660194, Blast_Score=236, Evalue=3e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 68904; Mature: 68773

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQMKRPLLRPLPWPSAGRVFAGLMLGAVFAGAGLPVLMPADPAVASTDDTSPASRAAAA
CCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
SEANGIAWPPAHVEPGHVSTPAAKQATPAAPVTPAPAATQAATPAPSAPAAPANAAATPA
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAVATPSTTAEAPKLNPLAEQVRQILAVPALEGLGITKREQEAIQSFYAARQDEPVFVT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
DKGLNAVGKGVEARFAAAAEDGLDPAAYPVPKLAAQPDLPALARAEVRLAASALLYARHA
CCCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QAGRFDPSRISPQLTPLRTFPDPVTVLSGLVDAKDASAVLAAYNPTHAGYKALKAKLALA
CCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHEE
DSHAGPAPVRVPGGPTLRPGDMDARVPALRARLGLKSATASDRLYDADLARAVAAFQGAS
CCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
GLNADGVVGPSTLEVLNRVENPAERRADIIANMERWRWLPRDLGSVHVMVNIPEFVVRVV
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHH
DDGKTIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLAR
CCCCEEEEEEEEEECCCCCCCEEECCCCEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHH
QGMEVVKNGRVVDPGTVNWAQGTGGYSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKA
HHHHHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCC
LFANDRRAYSHGCIRVQDPLKFAEVIFNIGMPGQGWTDEKIGKMLGGAERYLTLKQRIPV
EECCCCHHHHCCCEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHEEEHHHCCCE
HLVYFTTFVDDSGRLVSREDVYGTNAKVKEALGLDGEQKVAGRAVPVPR
EEEEEEEEECCCCCEEECCCCCCCCCHHHHHHCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
GQMKRPLLRPLPWPSAGRVFAGLMLGAVFAGAGLPVLMPADPAVASTDDTSPASRAAAA
CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
SEANGIAWPPAHVEPGHVSTPAAKQATPAAPVTPAPAATQAATPAPSAPAAPANAAATPA
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAVATPSTTAEAPKLNPLAEQVRQILAVPALEGLGITKREQEAIQSFYAARQDEPVFVT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
DKGLNAVGKGVEARFAAAAEDGLDPAAYPVPKLAAQPDLPALARAEVRLAASALLYARHA
CCCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QAGRFDPSRISPQLTPLRTFPDPVTVLSGLVDAKDASAVLAAYNPTHAGYKALKAKLALA
CCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHEE
DSHAGPAPVRVPGGPTLRPGDMDARVPALRARLGLKSATASDRLYDADLARAVAAFQGAS
CCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
GLNADGVVGPSTLEVLNRVENPAERRADIIANMERWRWLPRDLGSVHVMVNIPEFVVRVV
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHH
DDGKTIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLAR
CCCCEEEEEEEEEECCCCCCCEEECCCCEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHH
QGMEVVKNGRVVDPGTVNWAQGTGGYSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKA
HHHHHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCC
LFANDRRAYSHGCIRVQDPLKFAEVIFNIGMPGQGWTDEKIGKMLGGAERYLTLKQRIPV
EECCCCHHHHCCCEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHEEEHHHCCCE
HLVYFTTFVDDSGRLVSREDVYGTNAKVKEALGLDGEQKVAGRAVPVPR
EEEEEEEEECCCCCEEECCCCCCCCCHHHHHHCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]