| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is ppdK [H]
Identifier: 158422034
GI number: 158422034
Start: 461648
End: 464326
Strand: Direct
Name: ppdK [H]
Synonym: AZC_0410
Alternate gene names: 158422034
Gene position: 461648-464326 (Clockwise)
Preceding gene: 158422033
Following gene: 158422035
Centisome position: 8.6
GC content: 67.6
Gene sequence:
>2679_bases ATGACGAAATGGGTCTACTCCTTCGGCGACGGCAAGGCCGAAGGAAAATCCGAGATGCGGAACCTGCTCGGCGGCAAGGG TGCGAACCTCGCCGAGATGGCCAATCTCGGCCTGCCCGTTCCTCCTGGCTTCACGATTACCACCGAAGTCTGCACCTATT ATTACGCCCATGGCGAGACCTATCCGGCCGAGCTGAAGGGTGATGTGGAGGCCGCGCTCGCCAAGGTCGGCGCGCTCACC GGCAAGACCTTCGGCGATCCCGCCAATCCGCTTCTCGTCTCGGTCCGCTCCGGCGCCCGCGCCTCCATGCCGGGCATGAT GGACACCGTGCTCAACCTCGGCCTCAACGATGAGACCGTGGAAGCCGTGGCCAAGCTCGCCAACGACCGCCGCTTCGCCT ACGACAGCTACCGCCGCTTCATCACCATGTATTCCGACGTGGTGCTCGGCGTGGACCACCACCACTTCGAGGAGATCCTC GAGGGTTACAAGTCGCAGCACGGCCACACCCTCGACACCGACCTTGATGCCGACGACTGGGCGAAGCTCGTCGTGGAGTA CAAGGCGAAGGTCGAGAAGGAGCTGGGCAAACCCTTCCCGCAGAATCCGCAGGACCAGCTCTGGGGCGCCATCGGCGCCG TGTTCGGCTCCTGGATGAACCAGCGCGCCATCACCTACCGCCGCCTGCACTCCATTCCGGAGAGCTGGGGCACGGCCGTG AACGTGCAGGCCATGGTGTTCGGCAACATGGGCGAGACCTCGGCCACGGGCGTCGCCTTCACCCGCAACCCCTCCACCGG CGAGAACGCGCTCTATGGCGAGTTCCTCGTGAATGCGCAGGGTGAGGACGTGGTGGCGGGCATCCGCACCCCGCAGGATC TGACCGAGCGCGCCCGCATCGCCGCCGGCTCAGACAAGCCGTCCATGGAAAGCGCCCTGCCGGACGCCTTCAAGGAATTC GAGCGCATCTCCCACGTGCTGGAGAAGCACTACCGGGACATGCAGGATCTCGAGTTCACGGTCGAGAAGGGCAAGCTCTG GATGCTCCAGACCCGTTCCGGCAAGCGCACCGCCAAGGCGTCGCTGCGGATCGCGGTGGAGCTCGCCAATGAGGGCCTCA TCACGCAGGAGGAGGCGGTCGCCCGCGTCGATCCCGCCTCTCTCGACCAGCTCCTGCATCCGGCCATCGACCCCAAGGCC GAGCGCAACGTGATCGCCACCGGCCTGCCGGCGTCGCCCGGCGCGGCGGCGGGCGCCATCGTCTTCTCGGCAGACGAGGC CGAGACGATGAAGCACCAGGGCCACAAGGTGATCCTGGTCCGCATCGAGACCTCGCCTGAGGACATCCACGGCATGCACG CGGCCGAGGGCATCCTGACCTCGCGCGGCGGCATGACCTCGCACGCCGCCGTGGTGGCGCGCGGCATGGGCAAGCCCTGC GTCTCCGGCGCCGGCTCGCTGCGCATCGACTATGCGGCGCAGACGCTCACCGTGGCCGGCAAGACCTACAAGAAGGGCGA GACCCTCACCATCGACGGCTCCACCGGCCAAGTGCTGGCCGGCGAGGTTCCGATGCAGCAGCCGGAACTCTCCGGCGAGT TCGCGACCCTCATGGGTTGGGCCGACAAGGTGCGCCGCCTGAAGATCCGCGCCAATGCGGAGACCCCGCTGGACGCGCGC ATGGCCCGCTCCTTCGGCGCCGAGGGCATCGGCCTCTCGCGCACGGAGCACATGTTCTTCGACGCCGGCCGCATCCTCGC CGTGCGCGAGATGATCCTCGCCGACGACGAGGCCGGCCGCCGCTCGGCCCTCGCCAAGCTGCTGCCCATGCAGCGCGAGG ACTTCGTCGAGTTGTTCGAGATCATGAAGGGTCTGCCCGTCACGATCCGCCTGCTCGATCCGCCGCTGCACGAGTTCCTG CCGCACACCGACGCGGAAGTTCAGGAAGTCGCCAAGAGCCTCGGCGTCGAGGTGGAGCGCATCGAGCGCCGCCAGAAGGA GCTGCATGAGGTCAACCCCATGCTCGGCTTCCGTGGCTGCCGCATCGCCATCGCCTTCCCGGAAATCGCCGAGATGCAGG CCCGCGCCATCTTCGAGGCGGCCGTCATCGCCGCGAAGAAGACCGGCGAGGCCGTGGTGCCGGAAGTGATGGTTCCGCTC ATCGCCACCAAGGCGGAGTTCGACATCGTCAACGCCCGCATCCAGGCAGTGGCCAAGGCGGTCGAGGAAGAGACCGGCGC CAAGCTCACCTTCCAGGTGGGCACCATGATCGAGCTGCCGCGCGCCGCCCTGCGCGCCAAGGAGATCGCGGAGACCGCCG AGTTCTTCTCGTTCGGTACCAACGACCTCACCCAGACCTGCTACGGCGTCTCGCGCGACGACGCGGGCACCTTCCTCGGC CCGTATGTCCAGAAGGGCATCATCGAGGTGGACCCGTTCGTCTCCATCGACGTGGAAGGCGTGGGCGAACTGGTGAAGAT CGGCGTGGAGCGCGGCCGCCAGTCGCGTCCCGACATCAAGCTCGGCATCTGCGGCGAGCATGGCGGCGATCCGGCCTCGG TCGCCTTCTGCGACGAGGTGGGCCTCGACTACGTGTCCTGCTCGCCCTTCCGCGTGCCGATTGCCCGCCTCGCCGCCGCG CAGGCTGCGCTCGGCCGCAAGGCCGCCAGCCAGGCCTGA
Upstream 100 bases:
>100_bases GGGCGGGCCGTTCCGTGCAGTTGAAGCTTGCCCTTTCGCAAGCTAAAGCAACCGCGCCGTCGGCCTCTGACGCGCGCGCT ACCCTAAGGGGATCTCCGAG
Downstream 100 bases:
>100_bases TCCGGCCGCGCCGGACGACGGTTCGCAATTTGAGCGGGCGCCCCTCGGGGCGCCCGTTTGCGTTGGGGAAGCGAGGTCTT GGCCGTTCCTGCGTGCGTGC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 892; Mature: 891
Protein sequence:
>892_residues MTKWVYSFGDGKAEGKSEMRNLLGGKGANLAEMANLGLPVPPGFTITTEVCTYYYAHGETYPAELKGDVEAALAKVGALT GKTFGDPANPLLVSVRSGARASMPGMMDTVLNLGLNDETVEAVAKLANDRRFAYDSYRRFITMYSDVVLGVDHHHFEEIL EGYKSQHGHTLDTDLDADDWAKLVVEYKAKVEKELGKPFPQNPQDQLWGAIGAVFGSWMNQRAITYRRLHSIPESWGTAV NVQAMVFGNMGETSATGVAFTRNPSTGENALYGEFLVNAQGEDVVAGIRTPQDLTERARIAAGSDKPSMESALPDAFKEF ERISHVLEKHYRDMQDLEFTVEKGKLWMLQTRSGKRTAKASLRIAVELANEGLITQEEAVARVDPASLDQLLHPAIDPKA ERNVIATGLPASPGAAAGAIVFSADEAETMKHQGHKVILVRIETSPEDIHGMHAAEGILTSRGGMTSHAAVVARGMGKPC VSGAGSLRIDYAAQTLTVAGKTYKKGETLTIDGSTGQVLAGEVPMQQPELSGEFATLMGWADKVRRLKIRANAETPLDAR MARSFGAEGIGLSRTEHMFFDAGRILAVREMILADDEAGRRSALAKLLPMQREDFVELFEIMKGLPVTIRLLDPPLHEFL PHTDAEVQEVAKSLGVEVERIERRQKELHEVNPMLGFRGCRIAIAFPEIAEMQARAIFEAAVIAAKKTGEAVVPEVMVPL IATKAEFDIVNARIQAVAKAVEEETGAKLTFQVGTMIELPRAALRAKEIAETAEFFSFGTNDLTQTCYGVSRDDAGTFLG PYVQKGIIEVDPFVSIDVEGVGELVKIGVERGRQSRPDIKLGICGEHGGDPASVAFCDEVGLDYVSCSPFRVPIARLAAA QAALGRKAASQA
Sequences:
>Translated_892_residues MTKWVYSFGDGKAEGKSEMRNLLGGKGANLAEMANLGLPVPPGFTITTEVCTYYYAHGETYPAELKGDVEAALAKVGALT GKTFGDPANPLLVSVRSGARASMPGMMDTVLNLGLNDETVEAVAKLANDRRFAYDSYRRFITMYSDVVLGVDHHHFEEIL EGYKSQHGHTLDTDLDADDWAKLVVEYKAKVEKELGKPFPQNPQDQLWGAIGAVFGSWMNQRAITYRRLHSIPESWGTAV NVQAMVFGNMGETSATGVAFTRNPSTGENALYGEFLVNAQGEDVVAGIRTPQDLTERARIAAGSDKPSMESALPDAFKEF ERISHVLEKHYRDMQDLEFTVEKGKLWMLQTRSGKRTAKASLRIAVELANEGLITQEEAVARVDPASLDQLLHPAIDPKA ERNVIATGLPASPGAAAGAIVFSADEAETMKHQGHKVILVRIETSPEDIHGMHAAEGILTSRGGMTSHAAVVARGMGKPC VSGAGSLRIDYAAQTLTVAGKTYKKGETLTIDGSTGQVLAGEVPMQQPELSGEFATLMGWADKVRRLKIRANAETPLDAR MARSFGAEGIGLSRTEHMFFDAGRILAVREMILADDEAGRRSALAKLLPMQREDFVELFEIMKGLPVTIRLLDPPLHEFL PHTDAEVQEVAKSLGVEVERIERRQKELHEVNPMLGFRGCRIAIAFPEIAEMQARAIFEAAVIAAKKTGEAVVPEVMVPL IATKAEFDIVNARIQAVAKAVEEETGAKLTFQVGTMIELPRAALRAKEIAETAEFFSFGTNDLTQTCYGVSRDDAGTFLG PYVQKGIIEVDPFVSIDVEGVGELVKIGVERGRQSRPDIKLGICGEHGGDPASVAFCDEVGLDYVSCSPFRVPIARLAAA QAALGRKAASQA >Mature_891_residues TKWVYSFGDGKAEGKSEMRNLLGGKGANLAEMANLGLPVPPGFTITTEVCTYYYAHGETYPAELKGDVEAALAKVGALTG KTFGDPANPLLVSVRSGARASMPGMMDTVLNLGLNDETVEAVAKLANDRRFAYDSYRRFITMYSDVVLGVDHHHFEEILE GYKSQHGHTLDTDLDADDWAKLVVEYKAKVEKELGKPFPQNPQDQLWGAIGAVFGSWMNQRAITYRRLHSIPESWGTAVN VQAMVFGNMGETSATGVAFTRNPSTGENALYGEFLVNAQGEDVVAGIRTPQDLTERARIAAGSDKPSMESALPDAFKEFE RISHVLEKHYRDMQDLEFTVEKGKLWMLQTRSGKRTAKASLRIAVELANEGLITQEEAVARVDPASLDQLLHPAIDPKAE RNVIATGLPASPGAAAGAIVFSADEAETMKHQGHKVILVRIETSPEDIHGMHAAEGILTSRGGMTSHAAVVARGMGKPCV SGAGSLRIDYAAQTLTVAGKTYKKGETLTIDGSTGQVLAGEVPMQQPELSGEFATLMGWADKVRRLKIRANAETPLDARM ARSFGAEGIGLSRTEHMFFDAGRILAVREMILADDEAGRRSALAKLLPMQREDFVELFEIMKGLPVTIRLLDPPLHEFLP HTDAEVQEVAKSLGVEVERIERRQKELHEVNPMLGFRGCRIAIAFPEIAEMQARAIFEAAVIAAKKTGEAVVPEVMVPLI ATKAEFDIVNARIQAVAKAVEEETGAKLTFQVGTMIELPRAALRAKEIAETAEFFSFGTNDLTQTCYGVSRDDAGTFLGP YVQKGIIEVDPFVSIDVEGVGELVKIGVERGRQSRPDIKLGICGEHGGDPASVAFCDEVGLDYVSCSPFRVPIARLAAAQ AALGRKAASQA
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=458, Percent_Identity=24.6724890829694, Blast_Score=107, Evalue=4e-24, Organism=Escherichia coli, GI1787994, Length=742, Percent_Identity=24.7978436657682, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1789193, Length=433, Percent_Identity=24.9422632794457, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI1788726, Length=438, Percent_Identity=25.3424657534247, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 96595; Mature: 96464
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKWVYSFGDGKAEGKSEMRNLLGGKGANLAEMANLGLPVPPGFTITTEVCTYYYAHGET CCCEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCC YPAELKGDVEAALAKVGALTGKTFGDPANPLLVSVRSGARASMPGMMDTVLNLGLNDETV CCHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHH EAVAKLANDRRFAYDSYRRFITMYSDVVLGVDHHHFEEILEGYKSQHGHTLDTDLDADDW HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH AKLVVEYKAKVEKELGKPFPQNPQDQLWGAIGAVFGSWMNQRAITYRRLHSIPESWGTAV HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEE NVQAMVFGNMGETSATGVAFTRNPSTGENALYGEFLVNAQGEDVVAGIRTPQDLTERARI EEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCEEEECCCCHHHHHHHHH AAGSDKPSMESALPDAFKEFERISHVLEKHYRDMQDLEFTVEKGKLWMLQTRSGKRTAKA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEEEECCCCCHHHH SLRIAVELANEGLITQEEAVARVDPASLDQLLHPAIDPKAERNVIATGLPASPGAAAGAI EEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEE VFSADEAETMKHQGHKVILVRIETSPEDIHGMHAAEGILTSRGGMTSHAAVVARGMGKPC EEECCHHHHHHHCCCEEEEEEEECCCHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCC VSGAGSLRIDYAAQTLTVAGKTYKKGETLTIDGSTGQVLAGEVPMQQPELSGEFATLMGW CCCCCCEEEEECCEEEEECCCEECCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHH ADKVRRLKIRANAETPLDARMARSFGAEGIGLSRTEHMFFDAGRILAVREMILADDEAGR HHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCHH RSALAKLLPMQREDFVELFEIMKGLPVTIRLLDPPLHEFLPHTDAEVQEVAKSLGVEVER HHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHCCCHHH IERRQKELHEVNPMLGFRGCRIAIAFPEIAEMQARAIFEAAVIAAKKTGEAVVPEVMVPL HHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IATKAEFDIVNARIQAVAKAVEEETGAKLTFQVGTMIELPRAALRAKEIAETAEFFSFGT HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC NDLTQTCYGVSRDDAGTFLGPYVQKGIIEVDPFVSIDVEGVGELVKIGVERGRQSRPDIK CHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCEEEEEHHHHHHHHHHHHHHCCCCCCCEE LGICGEHGGDPASVAFCDEVGLDYVSCSPFRVPIARLAAAQAALGRKAASQA EEECCCCCCCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TKWVYSFGDGKAEGKSEMRNLLGGKGANLAEMANLGLPVPPGFTITTEVCTYYYAHGET CCEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCC YPAELKGDVEAALAKVGALTGKTFGDPANPLLVSVRSGARASMPGMMDTVLNLGLNDETV CCHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHH EAVAKLANDRRFAYDSYRRFITMYSDVVLGVDHHHFEEILEGYKSQHGHTLDTDLDADDW HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH AKLVVEYKAKVEKELGKPFPQNPQDQLWGAIGAVFGSWMNQRAITYRRLHSIPESWGTAV HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEE NVQAMVFGNMGETSATGVAFTRNPSTGENALYGEFLVNAQGEDVVAGIRTPQDLTERARI EEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCEEEECCCCHHHHHHHHH AAGSDKPSMESALPDAFKEFERISHVLEKHYRDMQDLEFTVEKGKLWMLQTRSGKRTAKA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEEEECCCCCHHHH SLRIAVELANEGLITQEEAVARVDPASLDQLLHPAIDPKAERNVIATGLPASPGAAAGAI EEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEE VFSADEAETMKHQGHKVILVRIETSPEDIHGMHAAEGILTSRGGMTSHAAVVARGMGKPC EEECCHHHHHHHCCCEEEEEEEECCCHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCC VSGAGSLRIDYAAQTLTVAGKTYKKGETLTIDGSTGQVLAGEVPMQQPELSGEFATLMGW CCCCCCEEEEECCEEEEECCCEECCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHH ADKVRRLKIRANAETPLDARMARSFGAEGIGLSRTEHMFFDAGRILAVREMILADDEAGR HHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCHH RSALAKLLPMQREDFVELFEIMKGLPVTIRLLDPPLHEFLPHTDAEVQEVAKSLGVEVER HHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHCCCHHH IERRQKELHEVNPMLGFRGCRIAIAFPEIAEMQARAIFEAAVIAAKKTGEAVVPEVMVPL HHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IATKAEFDIVNARIQAVAKAVEEETGAKLTFQVGTMIELPRAALRAKEIAETAEFFSFGT HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC NDLTQTCYGVSRDDAGTFLGPYVQKGIIEVDPFVSIDVEGVGELVKIGVERGRQSRPDIK CHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCEEEEEHHHHHHHHHHHHHHCCCCCCCEE LGICGEHGGDPASVAFCDEVGLDYVSCSPFRVPIARLAAAQAALGRKAASQA EEECCCCCCCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]