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The map label for this gene is ybaK [H]

Identifier: 158421872

GI number: 158421872

Start: 290949

End: 291422

Strand: Direct

Name: ybaK [H]

Synonym: AZC_0248

Alternate gene names: 158421872

Gene position: 290949-291422 (Clockwise)

Preceding gene: 158421870

Following gene: 158421873

Centisome position: 5.42

GC content: 69.83

Gene sequence:

>474_bases
ATGTCCAAGACCACCCGCGCCACGCAGGCCCTCCAGAAGGCCGGTATCGCCTTCACCGCCGTCTCCTATGACTATGATCC
GGACGCGCCGCGCGTCGGCCTTCAGGCGGCGGAGGCCATCGGCGCCGAGCCGGGCCGGGTGCTGAAGACGCTGATGGCCG
AGGTGGACGGCAAGCCGGTGTGCGCGGTCATCCCCTCCGACCGCGAGGTGAGCATGAAGAAGCTGGCGGCGGCCTTCGGC
GGCAAGTCGGCGCATATGATGAAGCCGGCGGATGCCGAGCGCCTCACCGGCTACCACGTGGGCGGCATCAGCCCCTTCGG
CCAGAAGCGGCAGGTGCCGACCGCCATGGAGGAGACCGCGCTCGCCTTTCCGGCCGTGTTCCTCAATGGTGGCCAGCGCG
GGCTTCAGGTGGAGGTGGACCCGAAAGCCGCCTGTGCCGCGCTGAATGCGAAGCCGGCGCCGCTCATCGCCTGA

Upstream 100 bases:

>100_bases
CCACCCTCGCAGCGGATCACTCCGCCGTGACATGCGCTTGACGCCGCGCCCCGCGCGGGACCAGAGATCGGGCCTCGTTT
TCTCGATCTCGGCCCCTGCC

Downstream 100 bases:

>100_bases
CAGGAACAGCGTCCGCGTCCCACCGTTCTCCTCTCAAAGACGGAAGGACACATCATGGACGCTCACGACGAGAAGATCCG
CGAACTCGCCTATCAGATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKTTRATQALQKAGIAFTAVSYDYDPDAPRVGLQAAEAIGAEPGRVLKTLMAEVDGKPVCAVIPSDREVSMKKLAAAFG
GKSAHMMKPADAERLTGYHVGGISPFGQKRQVPTAMEETALAFPAVFLNGGQRGLQVEVDPKAACAALNAKPAPLIA

Sequences:

>Translated_157_residues
MSKTTRATQALQKAGIAFTAVSYDYDPDAPRVGLQAAEAIGAEPGRVLKTLMAEVDGKPVCAVIPSDREVSMKKLAAAFG
GKSAHMMKPADAERLTGYHVGGISPFGQKRQVPTAMEETALAFPAVFLNGGQRGLQVEVDPKAACAALNAKPAPLIA
>Mature_156_residues
SKTTRATQALQKAGIAFTAVSYDYDPDAPRVGLQAAEAIGAEPGRVLKTLMAEVDGKPVCAVIPSDREVSMKKLAAAFGG
KSAHMMKPADAERLTGYHVGGISPFGQKRQVPTAMEETALAFPAVFLNGGQRGLQVEVDPKAACAALNAKPAPLIA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=154, Percent_Identity=37.012987012987, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16335; Mature: 16204

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTRATQALQKAGIAFTAVSYDYDPDAPRVGLQAAEAIGAEPGRVLKTLMAEVDGKPV
CCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
CAVIPSDREVSMKKLAAAFGGKSAHMMKPADAERLTGYHVGGISPFGQKRQVPTAMEETA
EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCEECCCCCCCCCCCCCCCHHHHHH
LAFPAVFLNGGQRGLQVEVDPKAACAALNAKPAPLIA
HHHHHEEECCCCCCCEEEECCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SKTTRATQALQKAGIAFTAVSYDYDPDAPRVGLQAAEAIGAEPGRVLKTLMAEVDGKPV
CCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
CAVIPSDREVSMKKLAAAFGGKSAHMMKPADAERLTGYHVGGISPFGQKRQVPTAMEETA
EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCEECCCCCCCCCCCCCCCHHHHHH
LAFPAVFLNGGQRGLQVEVDPKAACAALNAKPAPLIA
HHHHHEEECCCCCCCEEEECCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]