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The map label for this gene is cpcS [H]

Identifier: 158339019

GI number: 158339019

Start: 6004991

End: 6005479

Strand: Reverse

Name: cpcS [H]

Synonym: AM1_5938

Alternate gene names: 158339019

Gene position: 6005479-6004991 (Counterclockwise)

Preceding gene: 158339020

Following gene: 158339018

Centisome position: 92.34

GC content: 48.47

Gene sequence:

>489_bases
ATGGGAAATTTATCCTCTGAGGCCCAATCAGCGCAGCTTTGGATGGAACAACTGAGCTTGGAAGATAGAGCGGTTTTGGA
GTTGTGCAACGCTGCCGATGTTGATCCAACGGTGGCTCAGTGTGCCGCTAAAATTTCTTGGAAAGAACAGGGGTTTCAGG
TTCAGCCCCAAGAAACGGGGGAGTTGTTGTTGGTCGCACTATCAAACACACCCCATCAAGGAGAAATACTGCAACAAGTG
GGTACAGCCCCTTTGATGCGACTCAATTTTCAAATTGATGGTGATCAGAGACTGATTCTCGCAGGAACCCAAGATCAATT
TCATTTGGAGGAACGGGTATGGTTCGCCAGCCCTAATTTGCGTTTACGCATCAGTCTATTAAAACAGGCGAATCAACTGT
ATCAAGCGACTTGGTATTCTGAAGTGCGGATGGGGGTTTTGCCCGAACCTGCGCCTGAAGAACTACCCCATGCCGCCTCA
ACCAAGTAA

Upstream 100 bases:

>100_bases
CTAAAATTAGGGGATTGCCCACCCTCACAGTTTCATGGACATCCAGGCATTTATTCAACAAAGTTGCGGCCGATGGTTTA
CGCAGCGCACATGCCATCAG

Downstream 100 bases:

>100_bases
GCGGTAATCATTCAATTTATTTAGAAATAGGGATATCAGTATGGGGTTACCCATTGTTGCCATTGTTGGTCGCCCAAATG
TGGGTAAGTCAACCCTCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MGNLSSEAQSAQLWMEQLSLEDRAVLELCNAADVDPTVAQCAAKISWKEQGFQVQPQETGELLLVALSNTPHQGEILQQV
GTAPLMRLNFQIDGDQRLILAGTQDQFHLEERVWFASPNLRLRISLLKQANQLYQATWYSEVRMGVLPEPAPEELPHAAS
TK

Sequences:

>Translated_162_residues
MGNLSSEAQSAQLWMEQLSLEDRAVLELCNAADVDPTVAQCAAKISWKEQGFQVQPQETGELLLVALSNTPHQGEILQQV
GTAPLMRLNFQIDGDQRLILAGTQDQFHLEERVWFASPNLRLRISLLKQANQLYQATWYSEVRMGVLPEPAPEELPHAAS
TK
>Mature_161_residues
GNLSSEAQSAQLWMEQLSLEDRAVLELCNAADVDPTVAQCAAKISWKEQGFQVQPQETGELLLVALSNTPHQGEILQQVG
TAPLMRLNFQIDGDQRLILAGTQDQFHLEERVWFASPNLRLRISLLKQANQLYQATWYSEVRMGVLPEPAPEELPHAAST
K

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR018536 [H]

Pfam domain/function: PF09367 CpeS [H]

EC number: NA

Molecular weight: Translated: 18094; Mature: 17963

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNLSSEAQSAQLWMEQLSLEDRAVLELCNAADVDPTVAQCAAKISWKEQGFQVQPQETG
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHCCCCEECCCCCC
ELLLVALSNTPHQGEILQQVGTAPLMRLNFQIDGDQRLILAGTQDQFHLEERVWFASPNL
CEEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCHHHHHEEEEECCCC
RLRISLLKQANQLYQATWYSEVRMGVLPEPAPEELPHAASTK
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure 
GNLSSEAQSAQLWMEQLSLEDRAVLELCNAADVDPTVAQCAAKISWKEQGFQVQPQETG
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHCCCCEECCCCCC
ELLLVALSNTPHQGEILQQVGTAPLMRLNFQIDGDQRLILAGTQDQFHLEERVWFASPNL
CEEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCHHHHHEEEEECCCC
RLRISLLKQANQLYQATWYSEVRMGVLPEPAPEELPHAASTK
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]