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The map label for this gene is aphA [H]

Identifier: 158339005

GI number: 158339005

Start: 5991223

End: 5992149

Strand: Reverse

Name: aphA [H]

Synonym: AM1_5924

Alternate gene names: 158339005

Gene position: 5992149-5991223 (Counterclockwise)

Preceding gene: 158339007

Following gene: 158339004

Centisome position: 92.13

GC content: 41.21

Gene sequence:

>927_bases
ATGGATAAAGTTAGAGCGTTTCAATTAGGTGGTGTTGATTATATTACTAAGCCTTTTGAATTACCTGAAGTACTGGCGCG
AATTGAAAATCAAATTACCATTAGTCGCCTAAGAACTCAACTGCAAAACCAACAGCGAAAACTGCTCAGACAGAATCAAG
AGCTAATGCGGTCTAACCGAGAATTAGAGCAGTTTGCCCATGTGATGTCCCATGATTTGAAGCAGCCTTTACAAAGTTTT
CTATTCGCCATCGGGCTAGTCGAACAATGCTGTCAATCGAATACGAATCCCAAAGTGTTCGAGTATTTAAAGCGCTTGCG
AGATACCAGTGGGACCATGCAGAAGCTCATTGATGCTTTACTAGATTATGCTCGGGTTGGCAATGAAGAGTTGGCCATTG
AGGAAATTGCATGCGAGTCTATTTTGGCCATGGTACTCGATAATCTTCAGGTGGAAATTACTGAGCAATCTGCTGTTATT
CATCATGATGCCCTGCCCACTGTCATGGCAGATAGAAATCAAATGATGCAGCTCTTCTATCACCTCATTACAAATGCCTT
GAAATTCCAGCCTCCTAATAACAAACCAGACATTAAGATCTCAGTGAATTTGCTACCACAAGATGTGACTGAGCAAACAG
GCAGTACTGGATTTCTTTCCTTTGGAAACTATGATCAGCAGGAAAACTATAAAACTCAAAGCTACCTGTTTAGTATTCAT
GACAATGGTATTGGTCTAGATGCTGACCAAGTTGAGTTGATCTTTGAAGTCTTTCAAAGACTTAATTCAGATGATTACTC
AGGGACGGGGATGGGATTGGCAACCTGCAAAAAAATCCTAGAACGCCATAATGGACGCATTTGGGTGGAGTCAGAACTGG
GTAAAGGTACAAATGTATACTTTACGCTTCCACAAAATCCTTCCTGA

Upstream 100 bases:

>100_bases
CCCAGTGTGCCAAATCTCTCTACCACAATGTTAAGTCACAAGTCGTCCGCAGTATACCCGTGAAATTCCAGTAATTTTTA
TCAGCGCTCTAGACGAAGCG

Downstream 100 bases:

>100_bases
TCGCTTGGATGTAAAGGGAAAAACATTAATTTTTAAAAAATAATAAAAAGCAGATCTGAAGTGACCAGATAGCTGTTAGC
TCACACCAGAAGTTCTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDKVRAFQLGGVDYITKPFELPEVLARIENQITISRLRTQLQNQQRKLLRQNQELMRSNRELEQFAHVMSHDLKQPLQSF
LFAIGLVEQCCQSNTNPKVFEYLKRLRDTSGTMQKLIDALLDYARVGNEELAIEEIACESILAMVLDNLQVEITEQSAVI
HHDALPTVMADRNQMMQLFYHLITNALKFQPPNNKPDIKISVNLLPQDVTEQTGSTGFLSFGNYDQQENYKTQSYLFSIH
DNGIGLDADQVELIFEVFQRLNSDDYSGTGMGLATCKKILERHNGRIWVESELGKGTNVYFTLPQNPS

Sequences:

>Translated_308_residues
MDKVRAFQLGGVDYITKPFELPEVLARIENQITISRLRTQLQNQQRKLLRQNQELMRSNRELEQFAHVMSHDLKQPLQSF
LFAIGLVEQCCQSNTNPKVFEYLKRLRDTSGTMQKLIDALLDYARVGNEELAIEEIACESILAMVLDNLQVEITEQSAVI
HHDALPTVMADRNQMMQLFYHLITNALKFQPPNNKPDIKISVNLLPQDVTEQTGSTGFLSFGNYDQQENYKTQSYLFSIH
DNGIGLDADQVELIFEVFQRLNSDDYSGTGMGLATCKKILERHNGRIWVESELGKGTNVYFTLPQNPS
>Mature_308_residues
MDKVRAFQLGGVDYITKPFELPEVLARIENQITISRLRTQLQNQQRKLLRQNQELMRSNRELEQFAHVMSHDLKQPLQSF
LFAIGLVEQCCQSNTNPKVFEYLKRLRDTSGTMQKLIDALLDYARVGNEELAIEEIACESILAMVLDNLQVEITEQSAVI
HHDALPTVMADRNQMMQLFYHLITNALKFQPPNNKPDIKISVNLLPQDVTEQTGSTGFLSFGNYDQQENYKTQSYLFSIH
DNGIGLDADQVELIFEVFQRLNSDDYSGTGMGLATCKKILERHNGRIWVESELGKGTNVYFTLPQNPS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788393, Length=269, Percent_Identity=27.1375464684015, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994928, Length=266, Percent_Identity=23.3082706766917, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 35232; Mature: 35232

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVRAFQLGGVDYITKPFELPEVLARIENQITISRLRTQLQNQQRKLLRQNQELMRSNR
CCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELEQFAHVMSHDLKQPLQSFLFAIGLVEQCCQSNTNPKVFEYLKRLRDTSGTMQKLIDAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
LDYARVGNEELAIEEIACESILAMVLDNLQVEITEQSAVIHHDALPTVMADRNQMMQLFY
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHH
HLITNALKFQPPNNKPDIKISVNLLPQDVTEQTGSTGFLSFGNYDQQENYKTQSYLFSIH
HHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHCCCCCEEECCCCCCHHCCCHHHHEEEEE
DNGIGLDADQVELIFEVFQRLNSDDYSGTGMGLATCKKILERHNGRIWVESELGKGTNVY
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEE
FTLPQNPS
EECCCCCC
>Mature Secondary Structure
MDKVRAFQLGGVDYITKPFELPEVLARIENQITISRLRTQLQNQQRKLLRQNQELMRSNR
CCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELEQFAHVMSHDLKQPLQSFLFAIGLVEQCCQSNTNPKVFEYLKRLRDTSGTMQKLIDAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
LDYARVGNEELAIEEIACESILAMVLDNLQVEITEQSAVIHHDALPTVMADRNQMMQLFY
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHH
HLITNALKFQPPNNKPDIKISVNLLPQDVTEQTGSTGFLSFGNYDQQENYKTQSYLFSIH
HHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHCCCCCEEECCCCCCHHCCCHHHHEEEEE
DNGIGLDADQVELIFEVFQRLNSDDYSGTGMGLATCKKILERHNGRIWVESELGKGTNVY
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEE
FTLPQNPS
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]