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The map label for this gene is fdx5 [H]

Identifier: 158338893

GI number: 158338893

Start: 5889454

End: 5889927

Strand: Reverse

Name: fdx5 [H]

Synonym: AM1_5807

Alternate gene names: 158338893

Gene position: 5889927-5889454 (Counterclockwise)

Preceding gene: 158338894

Following gene: 158338891

Centisome position: 90.56

GC content: 46.41

Gene sequence:

>474_bases
ATGCCTAAACAAATTCAGTTGGAGCCCATCGATCATGAGGTTTCCGTCAAAACCAATGAAAACTTGCTGTCCATGTTGCT
CCAGCAGGAATTAAATGTTAATTGGAGTTGTGGTGGTCGGGGGCGTTGTAGTACCTGTCATGTGTATATCCAGTCTGGTA
CGGAGAGCTTGTCACCTAAAAGTAAGAGAGAGCTAAAAACCCTAGAGCTGCTCTCAAATTGCCAGGATAATTCTCGCTTG
GCCTGCCAAGCCAGAGTTCTTGGAGAAGGTGTTGTCGTAGAGCTGCCTGCGGGTATGTATCTCAGTGAGATTGAAGATCT
CGATGCTCTGATAGGTAAAAGGGTACAACAACCAATTCTCCATCCACTCAATGGCACCGTACTAGTTGAAGGAGGGTTGA
TGATTACCCGCTCTATCGTCAGCCAATTGGAAGAAGCGCTCGTTCAGATTGACCAACTTCTAGCTAGAAGCTGA

Upstream 100 bases:

>100_bases
AACGAAGAATCTGACGACCCCATGTTAGTTGAAAATCTCTTCGGCTAAGCCAAGATTAAGTCGTTCCTGTCTGCATAAAT
CGCCTACACGTTCATCCATC

Downstream 100 bases:

>100_bases
ATTATCCTGATTCGCCATTTCCATCGCTTTAGCTAGTTTTGCTATCCGGTGATGAGCATTAAAGTTGGCGGGCTATAGCT
TCCAAGTGTTCACCAAACAG

Product: Fe-S cluster-binding ferredoxin

Products: NA

Alternate protein names: Fd5 [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MPKQIQLEPIDHEVSVKTNENLLSMLLQQELNVNWSCGGRGRCSTCHVYIQSGTESLSPKSKRELKTLELLSNCQDNSRL
ACQARVLGEGVVVELPAGMYLSEIEDLDALIGKRVQQPILHPLNGTVLVEGGLMITRSIVSQLEEALVQIDQLLARS

Sequences:

>Translated_157_residues
MPKQIQLEPIDHEVSVKTNENLLSMLLQQELNVNWSCGGRGRCSTCHVYIQSGTESLSPKSKRELKTLELLSNCQDNSRL
ACQARVLGEGVVVELPAGMYLSEIEDLDALIGKRVQQPILHPLNGTVLVEGGLMITRSIVSQLEEALVQIDQLLARS
>Mature_156_residues
PKQIQLEPIDHEVSVKTNENLLSMLLQQELNVNWSCGGRGRCSTCHVYIQSGTESLSPKSKRELKTLELLSNCQDNSRLA
CQARVLGEGVVVELPAGMYLSEIEDLDALIGKRVQQPILHPLNGTVLVEGGLMITRSIVSQLEEALVQIDQLLARS

Specific function: May be involved in the assembly of iron-sulfur clusters (Isc-Fd) [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 17319; Mature: 17188

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQIQLEPIDHEVSVKTNENLLSMLLQQELNVNWSCGGRGRCSTCHVYIQSGTESLSPK
CCCCEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
SKRELKTLELLSNCQDNSRLACQARVLGEGVVVELPAGMYLSEIEDLDALIGKRVQQPIL
HHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
HPLNGTVLVEGGLMITRSIVSQLEEALVQIDQLLARS
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKQIQLEPIDHEVSVKTNENLLSMLLQQELNVNWSCGGRGRCSTCHVYIQSGTESLSPK
CCCEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
SKRELKTLELLSNCQDNSRLACQARVLGEGVVVELPAGMYLSEIEDLDALIGKRVQQPIL
HHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
HPLNGTVLVEGGLMITRSIVSQLEEALVQIDQLLARS
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320; 12564939 [H]