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The map label for this gene is 158338885

Identifier: 158338885

GI number: 158338885

Start: 5879939

End: 5881375

Strand: Reverse

Name: 158338885

Synonym: AM1_5798

Alternate gene names: NA

Gene position: 5881375-5879939 (Counterclockwise)

Preceding gene: 158338890

Following gene: 158338884

Centisome position: 90.43

GC content: 50.8

Gene sequence:

>1437_bases
GTGCAGAAAACCTTATTTTTGAGTCCCCCCTCTTTTGATGGATTTGATGGGGGTGCTGGTGCCCGGTATCAGGCCAAACG
AGAAATTACCTCCTTTTGGTATCCCACCTGGCTGGCCCAACCTGCAGCCTTAGTGCCAGGAAGTAAGCTGATTGATGCCC
CTCCCCATGAACAAACCGTCGAAGATGTGCTTAAGGTCGCCAAGGATTATGACTTGGTGATTATGCACACCAGCACGCCT
TCCCTTGCCAATGATGTCAAATGTGCGGAAGCGATTAAGGCCCAAAAGCCTGGTACTCGGGTTGGCTTTATTGGTGCCCA
CGTTGCCGTTTTGCCGGAAGAAACCCTGCGGGATAACCCCATTATTGATTTTGTCTGTCGCAACGAATTTGACTATACCT
GCAAAGATGTGGCCGAAGGTCTGCCTCTATCAGAAATCAAGGGGCTTAGCTATCGCGACGCAGATAATCAAATTCAACAC
AATCCCGAGCGGGACCTGATCCACGACTGGGATGCCATGCCGAGCGTCCTGCCCGTTTATGCTCGCGATTTGGATATCAA
AAAGTATTTCATCGGCTATCTTCTCCATCCCTATATTTCCTTTTACACGGGGCGTGGCTGTCCGGCTAAGTGCTCCTTCT
GTTTGTGGCCCCAAACCATTGGTGGCCATAATTACCGCGCTAAAAGCCCCGAAGCCGTGGGCAAAGAAATGGAGCAGGCC
AAGTACCTGTTTGGCGATACGGTGCGGGAATATATGTTTGATGACGATACGTTTACGATTGATAAACCTCGTGCGATCGC
AATTAGTGAACATCTCAAACGCCTCAAACTCACCTGGAGCTGTAACGCCCGGGCCAATCTAGACTACGACACCCTCAAGC
AGTTGCGAGATAACGGCCTCCGGCTATTGTTAGTGGGGTTTGAGTCTGGCAATCAGCAAATTCTGGACGGCATCAATAAG
GGCATCAAACTGGAAGTGGCTCGGAAGTTTATGGCCAACTGTCGCAAACTCGGTATCACCGTCCACGGCACCTTTATTAT
TGGCCTTCCCAACGAAAGCCAGGAAACCATCGAAGAAACAATTCGGTTTGCCTGTGAGGTGAACCCCCATACCATTCAGG
TATCGATTGCGGCCCCTTATCCCGGCACAGCCCTTTACGCCCAGGCTAAAGAGAATAACTGGTTTAGCGATACCTCTCTG
TTAGCAGATTCCGGGATTCAAACCTCAACCTTGGCCTATCCCAATCTTTCGAGTGCCGCGATTGAGGATGCTGTAGAGCG
CATGTATCGTCGGTTCTACTTCCGACCTCAAGCGATTATTCCGATTGTGGGTGAAATGCTAGGAGACCCGCAAATGTTGG
TCCGCCGTTTACGGGAAGGGCGGGAGTTCTTTGCCTATTTGAAAGAGCGACAAACCGGCGCAGCAGCCAAAGCGTAA

Upstream 100 bases:

>100_bases
GTTGCTTCAGTGTTCTGGGCGTTTGAGGGATGGTCCTCAATTGATGTTTCTAAAGCTAGAAACTTTGCTGTGACTGCATC
TTTAAGTGAGGAGTGAAACT

Downstream 100 bases:

>100_bases
GGTTGCCCCCGGAGGATTCAGTGACCTTCTCGACAGGACTCCCCTCCCGCCCTGGAGGGGAAAGTTAGGGATTTTGGAAA
CCATTAAATACACCGTCAGT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MQKTLFLSPPSFDGFDGGAGARYQAKREITSFWYPTWLAQPAALVPGSKLIDAPPHEQTVEDVLKVAKDYDLVIMHTSTP
SLANDVKCAEAIKAQKPGTRVGFIGAHVAVLPEETLRDNPIIDFVCRNEFDYTCKDVAEGLPLSEIKGLSYRDADNQIQH
NPERDLIHDWDAMPSVLPVYARDLDIKKYFIGYLLHPYISFYTGRGCPAKCSFCLWPQTIGGHNYRAKSPEAVGKEMEQA
KYLFGDTVREYMFDDDTFTIDKPRAIAISEHLKRLKLTWSCNARANLDYDTLKQLRDNGLRLLLVGFESGNQQILDGINK
GIKLEVARKFMANCRKLGITVHGTFIIGLPNESQETIEETIRFACEVNPHTIQVSIAAPYPGTALYAQAKENNWFSDTSL
LADSGIQTSTLAYPNLSSAAIEDAVERMYRRFYFRPQAIIPIVGEMLGDPQMLVRRLREGREFFAYLKERQTGAAAKA

Sequences:

>Translated_478_residues
MQKTLFLSPPSFDGFDGGAGARYQAKREITSFWYPTWLAQPAALVPGSKLIDAPPHEQTVEDVLKVAKDYDLVIMHTSTP
SLANDVKCAEAIKAQKPGTRVGFIGAHVAVLPEETLRDNPIIDFVCRNEFDYTCKDVAEGLPLSEIKGLSYRDADNQIQH
NPERDLIHDWDAMPSVLPVYARDLDIKKYFIGYLLHPYISFYTGRGCPAKCSFCLWPQTIGGHNYRAKSPEAVGKEMEQA
KYLFGDTVREYMFDDDTFTIDKPRAIAISEHLKRLKLTWSCNARANLDYDTLKQLRDNGLRLLLVGFESGNQQILDGINK
GIKLEVARKFMANCRKLGITVHGTFIIGLPNESQETIEETIRFACEVNPHTIQVSIAAPYPGTALYAQAKENNWFSDTSL
LADSGIQTSTLAYPNLSSAAIEDAVERMYRRFYFRPQAIIPIVGEMLGDPQMLVRRLREGREFFAYLKERQTGAAAKA
>Mature_478_residues
MQKTLFLSPPSFDGFDGGAGARYQAKREITSFWYPTWLAQPAALVPGSKLIDAPPHEQTVEDVLKVAKDYDLVIMHTSTP
SLANDVKCAEAIKAQKPGTRVGFIGAHVAVLPEETLRDNPIIDFVCRNEFDYTCKDVAEGLPLSEIKGLSYRDADNQIQH
NPERDLIHDWDAMPSVLPVYARDLDIKKYFIGYLLHPYISFYTGRGCPAKCSFCLWPQTIGGHNYRAKSPEAVGKEMEQA
KYLFGDTVREYMFDDDTFTIDKPRAIAISEHLKRLKLTWSCNARANLDYDTLKQLRDNGLRLLLVGFESGNQQILDGINK
GIKLEVARKFMANCRKLGITVHGTFIIGLPNESQETIEETIRFACEVNPHTIQVSIAAPYPGTALYAQAKENNWFSDTSL
LADSGIQTSTLAYPNLSSAAIEDAVERMYRRFYFRPQAIIPIVGEMLGDPQMLVRRLREGREFFAYLKERQTGAAAKA

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 53723; Mature: 53723

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTLFLSPPSFDGFDGGAGARYQAKREITSFWYPTWLAQPAALVPGSKLIDAPPHEQTV
CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHH
EDVLKVAKDYDLVIMHTSTPSLANDVKCAEAIKAQKPGTRVGFIGAHVAVLPEETLRDNP
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECEEEECCHHHCCCCC
IIDFVCRNEFDYTCKDVAEGLPLSEIKGLSYRDADNQIQHNPERDLIHDWDAMPSVLPVY
CEEEEECCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH
ARDLDIKKYFIGYLLHPYISFYTGRGCPAKCSFCLWPQTIGGHNYRAKSPEAVGKEMEQA
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHH
KYLFGDTVREYMFDDDTFTIDKPRAIAISEHLKRLKLTWSCNARANLDYDTLKQLRDNGL
HHHHHHHHHHHHCCCCCEEECCCCEEHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCC
RLLLVGFESGNQQILDGINKGIKLEVARKFMANCRKLGITVHGTFIIGLPNESQETIEET
EEEEEEECCCCHHHHHHCCCCEEHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHHH
IRFACEVNPHTIQVSIAAPYPGTALYAQAKENNWFSDTSLLADSGIQTSTLAYPNLSSAA
HHHHEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCEEECCCCCHHH
IEDAVERMYRRFYFRPQAIIPIVGEMLGDPQMLVRRLREGREFFAYLKERQTGAAAKA
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQKTLFLSPPSFDGFDGGAGARYQAKREITSFWYPTWLAQPAALVPGSKLIDAPPHEQTV
CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHH
EDVLKVAKDYDLVIMHTSTPSLANDVKCAEAIKAQKPGTRVGFIGAHVAVLPEETLRDNP
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECEEEECCHHHCCCCC
IIDFVCRNEFDYTCKDVAEGLPLSEIKGLSYRDADNQIQHNPERDLIHDWDAMPSVLPVY
CEEEEECCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH
ARDLDIKKYFIGYLLHPYISFYTGRGCPAKCSFCLWPQTIGGHNYRAKSPEAVGKEMEQA
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHH
KYLFGDTVREYMFDDDTFTIDKPRAIAISEHLKRLKLTWSCNARANLDYDTLKQLRDNGL
HHHHHHHHHHHHCCCCCEEECCCCEEHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCC
RLLLVGFESGNQQILDGINKGIKLEVARKFMANCRKLGITVHGTFIIGLPNESQETIEET
EEEEEEECCCCHHHHHHCCCCEEHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHHH
IRFACEVNPHTIQVSIAAPYPGTALYAQAKENNWFSDTSLLADSGIQTSTLAYPNLSSAA
HHHHEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCEEECCCCCHHH
IEDAVERMYRRFYFRPQAIIPIVGEMLGDPQMLVRRLREGREFFAYLKERQTGAAAKA
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]