| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is icd [H]
Identifier: 158338841
GI number: 158338841
Start: 5831970
End: 5834219
Strand: Direct
Name: icd [H]
Synonym: AM1_5754
Alternate gene names: 158338841
Gene position: 5831970-5834219 (Clockwise)
Preceding gene: 158338839
Following gene: 158338842
Centisome position: 89.67
GC content: 46.53
Gene sequence:
>2250_bases ATGTCCCCAAAAAAAGCCACAAGAATCATCTATACCCACACGGACGAAGCCCCCGCCTTAGCCACCTATTCTTTCCTGCC TATTGTCGAAGTTTTTACCCAAGTAGCCGGTATTGAGGTGGAAACGAGGGACATCTCCCTAGCTGGACGCATTATTGCGA GTTTCCCCGAGAAGCTAACTGCTGACCAACAGCAACTCGATAATCTAGCTTACTTAGGAGATCTGGCAAAAACTCCTGAA GCGATTATCATCAAACTCCCCAATATCAGTGCCTCTATCCCCCAATTAACTGCCGCGATCCAGGAGTTACAGGCCAAAGG GTATAACATTCCTGATTACCCAGCCAGTCCTCAAAATGAGCAGGAAATCACGATCAAAAACCGGTATGCCAAGGTTCTGG GAAGCGCAGTTAATCCAGTTTTAAGAGAGGGGAATTCAGATCGGCGAGTGGCTGCAGCCGTCAAACAATATGCCCAGAAA AACCCTCACTCTGTCGGTCCTTGGACATCCGATTCGAAATCTCATGTGGCTCACATGGATACTGGTGACTTTTATGGCAC TGAGCAATCTGTTGTGATCAGCCAATCAGGACAGGTCAAAATTCAGTTAGTAAGAGAAGACCATTCTCTGCAAGTTTTGA AAGAGAATGTCCATGTTCTTGAAGGCGAAGTCATTGACGCAGCAGTAATGCAGGTACAGGCGTTAAGAGCCTTTTATGAA CAGGAGATCAAGGCAGCAAAGGCTGAAGGCATCCTCTTGTCTTTACATGTCAAGGCCACCATGATGAAAGTCTCTGACCC GATCTTATTTGGCCATGCTTTAACCACTTACTACCAGGGTGTATTTACTGAATATGCTGATACATTTCAGGCGCTTGGGG TCAATGCCAACAATGGATTAGGCGATCTTTTTTCCAAGATTCAAACCTTGCCAGATTCAGAACGCTCAGCCATCACAACA GCTTTTAAGACGGCAGAACAATCTGGTCCACCCCTGGCCATGGTTAATTCTGATCTGGGCATATCAAATTTCCATGTCCC CAGCGATGTCATCATTGATGCATCTATGGCGGCTGCCATTCGGAACTCCGGCAAAATGTGGGGGCCCGATGGTCAACTCC ATGATACGAAGGCGATGATCCCCGATCGCAGTTACGCAACCATGTATCAAGAATGCATCAAATTCTGCCAAGAACATGGC GCTTTTGATGTCCAAACCATGGGAAATGTTGCCAATGTAGGGTTAATGGCTCAGAAGGCTGAAGAATATGGTTCCCATGA TAAGACCTTTGAAATTCCTGCTGACGGGACTGTCCAGGTCATAGATCAGACGGGGCAAATTTTAATGGAGCACTCGGTCC AGAAAGGGGACATTTGGCGCATGTGCCAAACTAAAGATATTCCCATCCAAGACTGGGTAAAATTGGCGGTTAATCGAGCC AAAGCTACAGGTTCTCCAACTATTTTCTGGTTAGATCCGGATCGGGCTCATGATGCAAACCTTATCCATAAGGTGCAGCA ATATTTGGCTCAATATGACATGACGGATCTAGATATTCGGATCATGTCTCCCGTTGATGCCATGTGCTTTACCTGTGAAC AGATTAAAGGTGGCCAAGACGTCATTTCGGCTACCGGGAATGTCTTACGGGACTACCTTACGGATTTGTTCCCCATTCTA GAATTAGGAACAAGCGCCAAAATGCTATCCATTGTTCCCCTACTCGCTGGAGGCGGATTATTTGAAACTGGCGCAGGGGG CTCTGCTCCCAAGCATGTTCAACAGTTTCTGAAAGAAGGGCATTTACGATGGGATTCTTTAGGAGAATTTCTGGCTTTGG CTGCAACTCTGGAAGATTTAGGACATAAGACCAGTAATAAAAATGCTCTAGCTTTAGCGACAGCACTCAATCAGGCGAAT AGCCAATATCTAGAACAAGCTAAATCCCCTTCCCGTGCTGTCCACGAGTTAGACAACCGGGGGAGCCATTTCTATTTAGC CCTCTACTGGGCTCAAGCTTTGGCCGAGCAAGATCAAAATCCTGCTTTCAAAACTCTGTTTATGGACTTATTCCAACAGC TCAGCGAGCACAAAGAGACTATTTTGGCCGAGCTTAATGCTCTCCAGGGCCATCCAACAGAGATTGGTGGGTATTACTTG CCAGATACAGAAAAAACTTGCCAAGCCATGCGTCCAAGCCAAACTTTGAATCGGATTTTGGCCTCATACCTTAAGAACAG CCCAGGATAG
Upstream 100 bases:
>100_bases GGGGGATACACTGATATACTCCACCAGGAAACGCTTGGTCACCTTACTATTAGGTTACCCATACAGCTGGTCAAGGTGCT GCAACCTTTAGAGAAGATAC
Downstream 100 bases:
>100_bases GAGATTTTTATCGCTCACCCACTTCCTCCTTGAATTAAGTCCTGGTTTTAAGGAGACCATTAAAGTTTTTTGTCGTTACA CAGCTTTTGATGGGCATTCT
Product: NADP-dependent isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 749; Mature: 748
Protein sequence:
>749_residues MSPKKATRIIYTHTDEAPALATYSFLPIVEVFTQVAGIEVETRDISLAGRIIASFPEKLTADQQQLDNLAYLGDLAKTPE AIIIKLPNISASIPQLTAAIQELQAKGYNIPDYPASPQNEQEITIKNRYAKVLGSAVNPVLREGNSDRRVAAAVKQYAQK NPHSVGPWTSDSKSHVAHMDTGDFYGTEQSVVISQSGQVKIQLVREDHSLQVLKENVHVLEGEVIDAAVMQVQALRAFYE QEIKAAKAEGILLSLHVKATMMKVSDPILFGHALTTYYQGVFTEYADTFQALGVNANNGLGDLFSKIQTLPDSERSAITT AFKTAEQSGPPLAMVNSDLGISNFHVPSDVIIDASMAAAIRNSGKMWGPDGQLHDTKAMIPDRSYATMYQECIKFCQEHG AFDVQTMGNVANVGLMAQKAEEYGSHDKTFEIPADGTVQVIDQTGQILMEHSVQKGDIWRMCQTKDIPIQDWVKLAVNRA KATGSPTIFWLDPDRAHDANLIHKVQQYLAQYDMTDLDIRIMSPVDAMCFTCEQIKGGQDVISATGNVLRDYLTDLFPIL ELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLKEGHLRWDSLGEFLALAATLEDLGHKTSNKNALALATALNQAN SQYLEQAKSPSRAVHELDNRGSHFYLALYWAQALAEQDQNPAFKTLFMDLFQQLSEHKETILAELNALQGHPTEIGGYYL PDTEKTCQAMRPSQTLNRILASYLKNSPG
Sequences:
>Translated_749_residues MSPKKATRIIYTHTDEAPALATYSFLPIVEVFTQVAGIEVETRDISLAGRIIASFPEKLTADQQQLDNLAYLGDLAKTPE AIIIKLPNISASIPQLTAAIQELQAKGYNIPDYPASPQNEQEITIKNRYAKVLGSAVNPVLREGNSDRRVAAAVKQYAQK NPHSVGPWTSDSKSHVAHMDTGDFYGTEQSVVISQSGQVKIQLVREDHSLQVLKENVHVLEGEVIDAAVMQVQALRAFYE QEIKAAKAEGILLSLHVKATMMKVSDPILFGHALTTYYQGVFTEYADTFQALGVNANNGLGDLFSKIQTLPDSERSAITT AFKTAEQSGPPLAMVNSDLGISNFHVPSDVIIDASMAAAIRNSGKMWGPDGQLHDTKAMIPDRSYATMYQECIKFCQEHG AFDVQTMGNVANVGLMAQKAEEYGSHDKTFEIPADGTVQVIDQTGQILMEHSVQKGDIWRMCQTKDIPIQDWVKLAVNRA KATGSPTIFWLDPDRAHDANLIHKVQQYLAQYDMTDLDIRIMSPVDAMCFTCEQIKGGQDVISATGNVLRDYLTDLFPIL ELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLKEGHLRWDSLGEFLALAATLEDLGHKTSNKNALALATALNQAN SQYLEQAKSPSRAVHELDNRGSHFYLALYWAQALAEQDQNPAFKTLFMDLFQQLSEHKETILAELNALQGHPTEIGGYYL PDTEKTCQAMRPSQTLNRILASYLKNSPG >Mature_748_residues SPKKATRIIYTHTDEAPALATYSFLPIVEVFTQVAGIEVETRDISLAGRIIASFPEKLTADQQQLDNLAYLGDLAKTPEA IIIKLPNISASIPQLTAAIQELQAKGYNIPDYPASPQNEQEITIKNRYAKVLGSAVNPVLREGNSDRRVAAAVKQYAQKN PHSVGPWTSDSKSHVAHMDTGDFYGTEQSVVISQSGQVKIQLVREDHSLQVLKENVHVLEGEVIDAAVMQVQALRAFYEQ EIKAAKAEGILLSLHVKATMMKVSDPILFGHALTTYYQGVFTEYADTFQALGVNANNGLGDLFSKIQTLPDSERSAITTA FKTAEQSGPPLAMVNSDLGISNFHVPSDVIIDASMAAAIRNSGKMWGPDGQLHDTKAMIPDRSYATMYQECIKFCQEHGA FDVQTMGNVANVGLMAQKAEEYGSHDKTFEIPADGTVQVIDQTGQILMEHSVQKGDIWRMCQTKDIPIQDWVKLAVNRAK ATGSPTIFWLDPDRAHDANLIHKVQQYLAQYDMTDLDIRIMSPVDAMCFTCEQIKGGQDVISATGNVLRDYLTDLFPILE LGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLKEGHLRWDSLGEFLALAATLEDLGHKTSNKNALALATALNQANS QYLEQAKSPSRAVHELDNRGSHFYLALYWAQALAEQDQNPAFKTLFMDLFQQLSEHKETILAELNALQGHPTEIGGYYLP DTEKTCQAMRPSQTLNRILASYLKNSPG
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 82195; Mature: 82064
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPKKATRIIYTHTDEAPALATYSFLPIVEVFTQVAGIEVETRDISLAGRIIASFPEKLT CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCHHHHC ADQQQLDNLAYLGDLAKTPEAIIIKLPNISASIPQLTAAIQELQAKGYNIPDYPASPQNE CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC QEITIKNRYAKVLGSAVNPVLREGNSDRRVAAAVKQYAQKNPHSVGPWTSDSKSHVAHMD CEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC TGDFYGTEQSVVISQSGQVKIQLVREDHSLQVLKENVHVLEGEVIDAAVMQVQALRAFYE CCCCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH QEIKAAKAEGILLSLHVKATMMKVSDPILFGHALTTYYQGVFTEYADTFQALGVNANNGL HHHHHHHHCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH GDLFSKIQTLPDSERSAITTAFKTAEQSGPPLAMVNSDLGISNFHVPSDVIIDASMAAAI HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHEECHHHHHHH RNSGKMWGPDGQLHDTKAMIPDRSYATMYQECIKFCQEHGAFDVQTMGNVANVGLMAQKA HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHHHH EEYGSHDKTFEIPADGTVQVIDQTGQILMEHSVQKGDIWRMCQTKDIPIQDWVKLAVNRA HHHCCCCCEEECCCCCEEEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHH KATGSPTIFWLDPDRAHDANLIHKVQQYLAQYDMTDLDIRIMSPVDAMCFTCEQIKGGQD CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCHH VISATGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLKEG HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHC HLRWDSLGEFLALAATLEDLGHKTSNKNALALATALNQANSQYLEQAKSPSRAVHELDNR CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC GSHFYLALYWAQALAEQDQNPAFKTLFMDLFQQLSEHKETILAELNALQGHPTEIGGYYL CCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEC PDTEKTCQAMRPSQTLNRILASYLKNSPG CCCHHHHHHCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SPKKATRIIYTHTDEAPALATYSFLPIVEVFTQVAGIEVETRDISLAGRIIASFPEKLT CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCHHHHC ADQQQLDNLAYLGDLAKTPEAIIIKLPNISASIPQLTAAIQELQAKGYNIPDYPASPQNE CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC QEITIKNRYAKVLGSAVNPVLREGNSDRRVAAAVKQYAQKNPHSVGPWTSDSKSHVAHMD CEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC TGDFYGTEQSVVISQSGQVKIQLVREDHSLQVLKENVHVLEGEVIDAAVMQVQALRAFYE CCCCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH QEIKAAKAEGILLSLHVKATMMKVSDPILFGHALTTYYQGVFTEYADTFQALGVNANNGL HHHHHHHHCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH GDLFSKIQTLPDSERSAITTAFKTAEQSGPPLAMVNSDLGISNFHVPSDVIIDASMAAAI HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHEECHHHHHHH RNSGKMWGPDGQLHDTKAMIPDRSYATMYQECIKFCQEHGAFDVQTMGNVANVGLMAQKA HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHHHH EEYGSHDKTFEIPADGTVQVIDQTGQILMEHSVQKGDIWRMCQTKDIPIQDWVKLAVNRA HHHCCCCCEEECCCCCEEEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHH KATGSPTIFWLDPDRAHDANLIHKVQQYLAQYDMTDLDIRIMSPVDAMCFTCEQIKGGQD CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCHH VISATGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLKEG HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHC HLRWDSLGEFLALAATLEDLGHKTSNKNALALATALNQANSQYLEQAKSPSRAVHELDNR CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC GSHFYLALYWAQALAEQDQNPAFKTLFMDLFQQLSEHKETILAELNALQGHPTEIGGYYL CCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEC PDTEKTCQAMRPSQTLNRILASYLKNSPG CCCHHHHHHCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]