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The map label for this gene is yjcF [C]

Identifier: 158338817

GI number: 158338817

Start: 5810477

End: 5811361

Strand: Direct

Name: yjcF [C]

Synonym: AM1_5730

Alternate gene names: 158338817

Gene position: 5810477-5811361 (Clockwise)

Preceding gene: 158338800

Following gene: 158338818

Centisome position: 89.34

GC content: 44.29

Gene sequence:

>885_bases
ATGAGAACGGGAATTATTGCAGCAGTGGTCTTTGTTGGACTATTAACTTGGCTAGGTAATAGCTCTAAACCATCTCCACA
AAGCCTTTCACCCACAACAGTTTCTCCTCCCCTGCCTGAGTCTTCTACGAATATACCGACTGTTCCTGTGGACGAATCAG
CGGGCCTATCGATTATTGCGCCCAATTCTGATGAAATTATTGAACGAATTCGATGGACAGGGAGTTGTGCTAACTGCAAT
TTACGGGGCATTAATTTGGAAGGGGCCGAGCTCGTCTTATTTCTACAGCCTCAAAAAGAGGAGCTATTCCAAGCGGAACA
AGCTTCTGCGATCGGCGTAAACTTGGAAAAAGTTAATTTCAGTAATGCTCAACTTAGTAAAGCCAACCTTTCTAGAGCTT
TTTTGCATAGTGCTGTCTTAGAAGAAGCTGTATTGAAAGAGGCCATATTGACTCAAGCTATCCTGAGACAAGCCAATCTT
CGGTCGGCAAATCTTGAATCAGCGCTGCTAGAAAATGCCCGTTTCCAAGATGCGGATTTAAGGCGGGTGAATTTACAGCA
GGCCTTTGTCAAATCAGCAAACTTTGCCCGGGCAAATTTGGTAGGGGCAGATCTAACAAAAGCAGATTTAAGAGAAACTG
ATTTTACCAGAGCTAATCTAACTCAAGCGGCGTTAACACAAGCTAAACTGCGGGATGCGAACTTCAGTCAAGCCAAACTC
ATCAATGCAAACTTATCTGACACTCGCATTGATGGTGCGAACTTCAGCGGTGCAGACCTAAGAGGGGCGCAATTACCCAA
GGCAGGACTCAATAATGTAAATTTCTGCCAAGCAACCATGCCTAATGGGAAAAAAAATACGAATTGCCCTAAACCTTCAT
CCTAG

Upstream 100 bases:

>100_bases
CACGATGTTGAAATTTGAGTCGCATTTGACGTCCATTTCCTGACGCCAATGCCCCTCCAAAAAGCTAGAGTGAGAGGCAG
CGCCAAATTATTCTGACACC

Downstream 100 bases:

>100_bases
AGGTCAAATCGGAGACTGATGTGGTGGGTTACCAAGAACGCTAGAGTAAAGTTGGGCGTTTAGGCAATAGATGAATTGAT
GAGATCTCCTAAAATCGGCT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRTGIIAAVVFVGLLTWLGNSSKPSPQSLSPTTVSPPLPESSTNIPTVPVDESAGLSIIAPNSDEIIERIRWTGSCANCN
LRGINLEGAELVLFLQPQKEELFQAEQASAIGVNLEKVNFSNAQLSKANLSRAFLHSAVLEEAVLKEAILTQAILRQANL
RSANLESALLENARFQDADLRRVNLQQAFVKSANFARANLVGADLTKADLRETDFTRANLTQAALTQAKLRDANFSQAKL
INANLSDTRIDGANFSGADLRGAQLPKAGLNNVNFCQATMPNGKKNTNCPKPSS

Sequences:

>Translated_294_residues
MRTGIIAAVVFVGLLTWLGNSSKPSPQSLSPTTVSPPLPESSTNIPTVPVDESAGLSIIAPNSDEIIERIRWTGSCANCN
LRGINLEGAELVLFLQPQKEELFQAEQASAIGVNLEKVNFSNAQLSKANLSRAFLHSAVLEEAVLKEAILTQAILRQANL
RSANLESALLENARFQDADLRRVNLQQAFVKSANFARANLVGADLTKADLRETDFTRANLTQAALTQAKLRDANFSQAKL
INANLSDTRIDGANFSGADLRGAQLPKAGLNNVNFCQATMPNGKKNTNCPKPSS
>Mature_294_residues
MRTGIIAAVVFVGLLTWLGNSSKPSPQSLSPTTVSPPLPESSTNIPTVPVDESAGLSIIAPNSDEIIERIRWTGSCANCN
LRGINLEGAELVLFLQPQKEELFQAEQASAIGVNLEKVNFSNAQLSKANLSRAFLHSAVLEEAVLKEAILTQAILRQANL
RSANLESALLENARFQDADLRRVNLQQAFVKSANFARANLVGADLTKADLRETDFTRANLTQAALTQAKLRDANFSQAKL
INANLSDTRIDGANFSGADLRGAQLPKAGLNNVNFCQATMPNGKKNTNCPKPSS

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=187, Percent_Identity=31.5508021390374, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221377802, Length=197, Percent_Identity=29.9492385786802, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 31580; Mature: 31580

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTGIIAAVVFVGLLTWLGNSSKPSPQSLSPTTVSPPLPESSTNIPTVPVDESAGLSIIA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
PNSDEIIERIRWTGSCANCNLRGINLEGAELVLFLQPQKEELFQAEQASAIGVNLEKVNF
CCHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECC
SNAQLSKANLSRAFLHSAVLEEAVLKEAILTQAILRQANLRSANLESALLENARFQDADL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHH
RRVNLQQAFVKSANFARANLVGADLTKADLRETDFTRANLTQAALTQAKLRDANFSQAKL
HHHHHHHHHHHHCCCCHHEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEE
INANLSDTRIDGANFSGADLRGAQLPKAGLNNVNFCQATMPNGKKNTNCPKPSS
EECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTGIIAAVVFVGLLTWLGNSSKPSPQSLSPTTVSPPLPESSTNIPTVPVDESAGLSIIA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
PNSDEIIERIRWTGSCANCNLRGINLEGAELVLFLQPQKEELFQAEQASAIGVNLEKVNF
CCHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECC
SNAQLSKANLSRAFLHSAVLEEAVLKEAILTQAILRQANLRSANLESALLENARFQDADL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHH
RRVNLQQAFVKSANFARANLVGADLTKADLRETDFTRANLTQAALTQAKLRDANFSQAKL
HHHHHHHHHHHHCCCCHHEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEE
INANLSDTRIDGANFSGADLRGAQLPKAGLNNVNFCQATMPNGKKNTNCPKPSS
EECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA