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The map label for this gene is yjcF [C]

Identifier: 158338762

GI number: 158338762

Start: 5737634

End: 5738257

Strand: Direct

Name: yjcF [C]

Synonym: AM1_5673

Alternate gene names: 158338762

Gene position: 5737634-5738257 (Clockwise)

Preceding gene: 158338761

Following gene: 158338765

Centisome position: 88.22

GC content: 52.4

Gene sequence:

>624_bases
ATGAACTATAAATCTTTAGTCCTGGCGGCTGGTTTGGTTGCGATCGCACTTCCAGTACGGGCAGAATTACCTGAGCATAT
TCAAGAATTACTCAATACCCGTCGCTGTATTCGGTGTGATTTGTCTCGCGCCAATTTTGGCGGTATGGATCTGAGCGTGA
CCAACCTGCAAGGGGCAAACTTGATTTTCTCTAATTTGGAGAATGTCAACCTCAACGCCTCTAACCTGACGGGGGCCAAG
CTGATCCAGGCTCGGATGTCTGACGCGAATTTGCAAACCACCAACTTAAGCGTCACGGACTTAAGTAAAGCGGATTTGCG
AGGCGCTAACTTGGTGGGGGCAGATTTGCGCAGTAGTCGCATGACCTCTGCCAACCTGAAAGGGGCAAAACTGCAGCAAG
CCAAGCTGCAAGGGGTCAACCTAGGGGCCGCCAATCTGAAAGGGGCAAAGCTAAATGGGGCTAATTTGTTCTCGGCTGAT
TTACGCGGGGCCAACCTTCAAAATGCGGACCTATCAGGGGCCAACCTCAAGGAAGCTGATTTGAGTGGTGCGAATGTGAA
GGGGATTAAACTCACGGACGCCGACCTAACGGGGGCCACCCTCCCGGATGGCATCCCCCAGTAG

Upstream 100 bases:

>100_bases
GGGTCACCGTTGCCAAGAGTCGTAAGCGTTGGGACCTAGGGCCTGGAAGAGGCTTTATCGAAGACAAACCTGAAAAGCTA
GCGGATTAAGGATCAAAATG

Downstream 100 bases:

>100_bases
GTCTTACTTACAGGTTGCCAAGGCTTGAAGAGAAGCGGGGATATCCATCTGACAGAGTTTAGCCCCGCTTAAGTCTGCAT
TGCTCAAGTTGGCACCGCGC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNYKSLVLAAGLVAIALPVRAELPEHIQELLNTRRCIRCDLSRANFGGMDLSVTNLQGANLIFSNLENVNLNASNLTGAK
LIQARMSDANLQTTNLSVTDLSKADLRGANLVGADLRSSRMTSANLKGAKLQQAKLQGVNLGAANLKGAKLNGANLFSAD
LRGANLQNADLSGANLKEADLSGANVKGIKLTDADLTGATLPDGIPQ

Sequences:

>Translated_207_residues
MNYKSLVLAAGLVAIALPVRAELPEHIQELLNTRRCIRCDLSRANFGGMDLSVTNLQGANLIFSNLENVNLNASNLTGAK
LIQARMSDANLQTTNLSVTDLSKADLRGANLVGADLRSSRMTSANLKGAKLQQAKLQGVNLGAANLKGAKLNGANLFSAD
LRGANLQNADLSGANLKEADLSGANVKGIKLTDADLTGATLPDGIPQ
>Mature_207_residues
MNYKSLVLAAGLVAIALPVRAELPEHIQELLNTRRCIRCDLSRANFGGMDLSVTNLQGANLIFSNLENVNLNASNLTGAK
LIQARMSDANLQTTNLSVTDLSKADLRGANLVGADLRSSRMTSANLKGAKLQQAKLQGVNLGAANLKGAKLNGANLFSAD
LRGANLQNADLSGANLKEADLSGANVKGIKLTDADLTGATLPDGIPQ

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=174, Percent_Identity=36.2068965517241, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221377802, Length=169, Percent_Identity=37.8698224852071, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 21618; Mature: 21618

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKSLVLAAGLVAIALPVRAELPEHIQELLNTRRCIRCDLSRANFGGMDLSVTNLQGAN
CCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEECCCCCE
LIFSNLENVNLNASNLTGAKLIQARMSDANLQTTNLSVTDLSKADLRGANLVGADLRSSR
EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCHHHCCCCCEECCCCCCCC
MTSANLKGAKLQQAKLQGVNLGAANLKGAKLNGANLFSADLRGANLQNADLSGANLKEAD
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCC
LSGANVKGIKLTDADLTGATLPDGIPQ
CCCCCCCEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNYKSLVLAAGLVAIALPVRAELPEHIQELLNTRRCIRCDLSRANFGGMDLSVTNLQGAN
CCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEECCCCCE
LIFSNLENVNLNASNLTGAKLIQARMSDANLQTTNLSVTDLSKADLRGANLVGADLRSSR
EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCHHHCCCCCEECCCCCCCC
MTSANLKGAKLQQAKLQGVNLGAANLKGAKLNGANLFSADLRGANLQNADLSGANLKEAD
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCC
LSGANVKGIKLTDADLTGATLPDGIPQ
CCCCCCCEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA