| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is recJ [H]
Identifier: 158338691
GI number: 158338691
Start: 5657810
End: 5660152
Strand: Direct
Name: recJ [H]
Synonym: AM1_5599
Alternate gene names: 158338691
Gene position: 5657810-5660152 (Clockwise)
Preceding gene: 158338690
Following gene: 158338692
Centisome position: 86.99
GC content: 51.39
Gene sequence:
>2343_bases ATGCCCACTGACCCTCAATGGCATCTAATTCAAGCTGTCACGCCACCGAAGTGGCTGATTGCTGATATACAACGTGTTGC GCCAGAAATATCAGGTCAATATTTAGCTCAATTGCTCTGGCAGCGGGGGATTCACGACCCTCAAATGATTCCTGGATTTT TAGATCCGAATCATTACCAACCCACTCCTCCTTCTGCCTTTGGAGCAGAGATGGAGCAAGCGGTTCAACGGCTGATACAG GCTTGCGATCGCAACCAAAAAGTAGCCATCTGGGGCGACTTCGATGCCGACGGCATCACCTCAACCGCCGTGTTCTGGGA CGGACTCGGACAATTTTTTACCCAGAATCGCTTCCTCACCTACACCATTCCCAATCGCATCACAGAATCACACGGTCTGA ATCGGCCTGGAATTGAGCGGTTAGCCGTGCAAGGTTATCAGCTGATCGTGACCTGCGATACGGGTAGTACGAATCTGACT GAAATTGAATATGCCAACGAGCTGGGGTTAGATGTGATCATCACGGATCACCATACCTTGCCGCCAGAACGGCCTCCCGT GACCGCTATTATTAACTCGCGGTATTTCCCCTCGGATCATCCCTTGGCCCATCTATCTGGAGTAGCAGTGGCTTTTAAGC TGGTGGAAGCCCTTTACTTGGCGTTGCCCCAGGTTCCTCAGCAGCCCCTAGACCATCTACTAGACTTGGTGGCGATTGGT CTGATTGCCGATCTGGTTGCTCTAAAAGGAGATTGTCGGTATTTGGCCCAACGGGGCATTCAGCAGCTGCAACGGCAACT TACCCAACGGACTCGACCCGGCGTTGCCAAGCTCTTAGAACTGTGTAAGCGCAACGGCGATCGACCCACCGATATTTCCT TTGGCCTTGGCCCCCGCATCAACGCGGTTAGCCGCATTCATGGCGAGGCTAGTTTTTGTGTGGAGTTACTGACCAGCAAA GATTCGGCTCGCTGTCGGCAGTTGGCGGAAGAAACTGAACTGGCCAATACCCGCCGCAAATCCCTACAAAAGGATGTGCT GCGGCAGGTGACCCGCAAGCTAGAACAACTGGATCTGTCTACTACGTCCGTTATTGTTTTAAGTGATCCGCAATGGCCCA TTGGTGTATTGGGATTAGTCGCAGGTCAGATTGCTCAAACCTATGGCCGACCGACCATTCTTCTCTGTGAAGAAACGGTG GCGGGCAAGAACAATGTTCGCCTTGCCCGTGGTTCAGCCCGGTCTGTAAACCAGATCGATCTCTATGAACTGGTGCATAG TCAGGCGAATCTACTGACGAGCTTTGGTGGTCATCCCTTTGCCGCAGGGTTGAGCTTACCCGTTGCCAACATTCCCTTAC TGGTGGAGGGCATTAATCAGCAGGCTCGACAACAGCAATCCTCAGACCCTGCAGCCGTTGTTCAGGCAGATTTGGTGGTG ACCTTAGCTGAACTAGCCACTGATGGGGGCCGGTCACTATTTAAGGAATTAAAGCTGTTAGAACCCTGTGGGATGGGTAA TCCTGTACCCAAGTTACTGATTCGCAACTGCTGGTTTGATCAGGTTTGGAACAAGAACATCAAAGACCGTAAAGGCAACA AGGTTCAATACATCAAAACCACCTTCTATATCTGTGATACGTCGTTTGAGTCAGGGTTCCCAGGATTATGGTGGGGGCAT TATAAGGAGGAGATTCCCGCTGGTCCTTGTGATGCGATTGTGGAGCTGGATTTTAATGCTTACGAAAGACGATATGAGGT ACGCCTTGAAGCAGTGCGACCAGTAGCAGAGAATCCAACCCAGACCTTGAATTCACCCATCGTGGATTGGCGACAGAACT CAAATAAGGCTGAACCCAACCCAGAACTATTGGTGATGGATCACTGTCCCGATTCCTGGGCTACGGTTCAAAGTTGGGCA AAGCAGGCCAAAATGGCGGGCAAGACGTTAGCCGTCGCTTATCAGAGCGCTGATGCTCCTGACTCAGTGGCGGTATGGAA ACAGTTGGTGGGGATGGCTAAGTACTTGGCGCGAATGGAGAGAGGCGTCAGCCGAACTTTGCTGCAAGCCAGCCTCAAGA TTGGCCCTCAGGCGCTACAGGTGGGCTTAGAGAGTTTGCAGGTGTACGGTTTTACAGTACGTGATCACAAAAACCTGATC CATATTAGCGGCAAGCCATCTACTAAAACCTTGACGGCGGAAGAGCGTCAACAGGCTATTCTGCAATTTGTAGATGCGGT CCGAGAAGAACAGTTTCAGCAGCAGTACTTTCAAGCCGTTTCGGTAGATGTGATGGGTGGAATCATTGCTGACCAGCAGG ATCCTGATGATGCGATGCCCTAG
Upstream 100 bases:
>100_bases GAGGTGTATCAGCGCTATCTTAGAGGAGAGATTGGTGTCCACCACTATTCCTCCTTGGTGGATGAGCTAATTGAGCAAAA CGCTGCCCACACTACTGCGA
Downstream 100 bases:
>100_bases GTGCGATCGCAACTTTCCTCCCTCCACAATCAAGCTTTCCTTAATTCCATCTTCTTTCTGATTCCATCACCCATCATGCT CCGAAAACTTGTCGCAGCCC
Product: single-stranded-DNA-specific exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 780; Mature: 779
Protein sequence:
>780_residues MPTDPQWHLIQAVTPPKWLIADIQRVAPEISGQYLAQLLWQRGIHDPQMIPGFLDPNHYQPTPPSAFGAEMEQAVQRLIQ ACDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLTYTIPNRITESHGLNRPGIERLAVQGYQLIVTCDTGSTNLT EIEYANELGLDVIITDHHTLPPERPPVTAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQPLDHLLDLVAIG LIADLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGDRPTDISFGLGPRINAVSRIHGEASFCVELLTSK DSARCRQLAEETELANTRRKSLQKDVLRQVTRKLEQLDLSTTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETV AGKNNVRLARGSARSVNQIDLYELVHSQANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSSDPAAVVQADLVV TLAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQYIKTTFYICDTSFESGFPGLWWGH YKEEIPAGPCDAIVELDFNAYERRYEVRLEAVRPVAENPTQTLNSPIVDWRQNSNKAEPNPELLVMDHCPDSWATVQSWA KQAKMAGKTLAVAYQSADAPDSVAVWKQLVGMAKYLARMERGVSRTLLQASLKIGPQALQVGLESLQVYGFTVRDHKNLI HISGKPSTKTLTAEERQQAILQFVDAVREEQFQQQYFQAVSVDVMGGIIADQQDPDDAMP
Sequences:
>Translated_780_residues MPTDPQWHLIQAVTPPKWLIADIQRVAPEISGQYLAQLLWQRGIHDPQMIPGFLDPNHYQPTPPSAFGAEMEQAVQRLIQ ACDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLTYTIPNRITESHGLNRPGIERLAVQGYQLIVTCDTGSTNLT EIEYANELGLDVIITDHHTLPPERPPVTAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQPLDHLLDLVAIG LIADLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGDRPTDISFGLGPRINAVSRIHGEASFCVELLTSK DSARCRQLAEETELANTRRKSLQKDVLRQVTRKLEQLDLSTTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETV AGKNNVRLARGSARSVNQIDLYELVHSQANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSSDPAAVVQADLVV TLAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQYIKTTFYICDTSFESGFPGLWWGH YKEEIPAGPCDAIVELDFNAYERRYEVRLEAVRPVAENPTQTLNSPIVDWRQNSNKAEPNPELLVMDHCPDSWATVQSWA KQAKMAGKTLAVAYQSADAPDSVAVWKQLVGMAKYLARMERGVSRTLLQASLKIGPQALQVGLESLQVYGFTVRDHKNLI HISGKPSTKTLTAEERQQAILQFVDAVREEQFQQQYFQAVSVDVMGGIIADQQDPDDAMP >Mature_779_residues PTDPQWHLIQAVTPPKWLIADIQRVAPEISGQYLAQLLWQRGIHDPQMIPGFLDPNHYQPTPPSAFGAEMEQAVQRLIQA CDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLTYTIPNRITESHGLNRPGIERLAVQGYQLIVTCDTGSTNLTE IEYANELGLDVIITDHHTLPPERPPVTAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQPLDHLLDLVAIGL IADLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGDRPTDISFGLGPRINAVSRIHGEASFCVELLTSKD SARCRQLAEETELANTRRKSLQKDVLRQVTRKLEQLDLSTTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETVA GKNNVRLARGSARSVNQIDLYELVHSQANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSSDPAAVVQADLVVT LAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQYIKTTFYICDTSFESGFPGLWWGHY KEEIPAGPCDAIVELDFNAYERRYEVRLEAVRPVAENPTQTLNSPIVDWRQNSNKAEPNPELLVMDHCPDSWATVQSWAK QAKMAGKTLAVAYQSADAPDSVAVWKQLVGMAKYLARMERGVSRTLLQASLKIGPQALQVGLESLQVYGFTVRDHKNLIH ISGKPSTKTLTAEERQQAILQFVDAVREEQFQQQYFQAVSVDVMGGIIADQQDPDDAMP
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=445, Percent_Identity=30.7865168539326, Blast_Score=191, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 86675; Mature: 86544
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTDPQWHLIQAVTPPKWLIADIQRVAPEISGQYLAQLLWQRGIHDPQMIPGFLDPNHYQ CCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCC PTPPSAFGAEMEQAVQRLIQACDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLT CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE YTIPNRITESHGLNRPGIERLAVQGYQLIVTCDTGSTNLTEIEYANELGLDVIITDHHTL EECCCHHHHHCCCCCCCHHHHHHCCEEEEEEECCCCCCCEEEEEHHHCCCEEEEECCCCC PPERPPVTAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQPLDHLLDLVAIG CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LIADLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGDRPTDISFGLGPRI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH NAVSRIHGEASFCVELLTSKDSARCRQLAEETELANTRRKSLQKDVLRQVTRKLEQLDLS HHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETVAGKNNVRLARGSARSVNQID CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCHHH LYELVHSQANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSSDPAAVVQADLVV HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHHHH TLAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQYIKT HHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEEE TFYICDTSFESGFPGLWWGHYKEEIPAGPCDAIVELDFNAYERRYEVRLEAVRPVAENPT EEEEEECCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCH QTLNSPIVDWRQNSNKAEPNPELLVMDHCPDSWATVQSWAKQAKMAGKTLAVAYQSADAP HHHCCCCHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC DSVAVWKQLVGMAKYLARMERGVSRTLLQASLKIGPQALQVGLESLQVYGFTVRDHKNLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEEECCCCEE HISGKPSTKTLTAEERQQAILQFVDAVREEQFQQQYFQAVSVDVMGGIIADQQDPDDAMP EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC >Mature Secondary Structure PTDPQWHLIQAVTPPKWLIADIQRVAPEISGQYLAQLLWQRGIHDPQMIPGFLDPNHYQ CCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCC PTPPSAFGAEMEQAVQRLIQACDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLT CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE YTIPNRITESHGLNRPGIERLAVQGYQLIVTCDTGSTNLTEIEYANELGLDVIITDHHTL EECCCHHHHHCCCCCCCHHHHHHCCEEEEEEECCCCCCCEEEEEHHHCCCEEEEECCCCC PPERPPVTAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQPLDHLLDLVAIG CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LIADLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGDRPTDISFGLGPRI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH NAVSRIHGEASFCVELLTSKDSARCRQLAEETELANTRRKSLQKDVLRQVTRKLEQLDLS HHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETVAGKNNVRLARGSARSVNQID CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCHHH LYELVHSQANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSSDPAAVVQADLVV HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHHHH TLAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQYIKT HHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEEE TFYICDTSFESGFPGLWWGHYKEEIPAGPCDAIVELDFNAYERRYEVRLEAVRPVAENPT EEEEEECCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCH QTLNSPIVDWRQNSNKAEPNPELLVMDHCPDSWATVQSWAKQAKMAGKTLAVAYQSADAP HHHCCCCHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC DSVAVWKQLVGMAKYLARMERGVSRTLLQASLKIGPQALQVGLESLQVYGFTVRDHKNLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEEECCCCEE HISGKPSTKTLTAEERQQAILQFVDAVREEQFQQQYFQAVSVDVMGGIIADQQDPDDAMP EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]