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The map label for this gene is lpsD [H]

Identifier: 158338644

GI number: 158338644

Start: 5598428

End: 5599672

Strand: Reverse

Name: lpsD [H]

Synonym: AM1_5548

Alternate gene names: 158338644

Gene position: 5599672-5598428 (Counterclockwise)

Preceding gene: 158338645

Following gene: 158338643

Centisome position: 86.1

GC content: 45.54

Gene sequence:

>1245_bases
ATGTCTCAACGCTTGAATGTGTTGATTTCTGCTTATGCCTGCCGACCCCATGAAGGGTCTGAGCCTGGAGTAGGTTGGAA
TTTGGTGCTCGAATTATCCAAGTATCACCGTATTTGGGTGTTAACTCGAGGAAACAATCAAATTCCTATAGAAACTGAAC
TCAGTCAACATCCTGTTTCCGATCTCAACTTTATTTATTGTGAACCGTCTCAAGTTCTAGCCAAGCTCAATCAAAATCTG
AGAATTGTTCACCTACACTATTATCTTTGGCAGTTAAAAGCATATTGGGTTGCCAAAAAATTACATGACGAAATAAATTT
CGACATTATCCACCATGTCACTTATGTTCGCTATTCCACCCCAAGTTTTCTGTCATTCTTACCCCCGCCTTTTATTTGGG
GGCCGGTAGGCGGCGGAGAAACCACTCCCAATCAGTTCTGGCAAAGTTTCAGTCTTAGGGGCAAGATCTATGAAATCCTC
CGTGAATCTGCTCGTCGACTAGGAGAAGTCGATCCTTTTGTCCATCAGACCGCTGCAAGAAGTTCCCTCGCTCGAGGGAC
CACTCAAGATACCGTTGATCGGCTCAAAGCTCTCGGTGCATCTGAGGTGGAGGTTTACTCGCAATTAGGATTGTCCACAA
GCGAAATTGCCACGTTAAATCTTAAATCGAATAACCACGAGCGGGCAACGCGGTTTGTCAGTATTGGGCGTTTGCTGCAT
TGGAAAGGCTTTCACTTAGGGTTGCAGGCCTTTGCTCAAGCGAATTTACCTGAGAATACCGAATATTGGATTATTGGTGA
TGGCCCTGAACGTCAACACTTACAGCAACTAGCCGCTACGCTTCAAATCGATCACCAAGTTAAGTTTTGGTCTCAACTCT
CCCGAGAAGAAACCCTCAATAAATTAGGGGAATGCTTGGCACTCATTCATCCCAGTTTGCATGAGTCGGGTGGTCTAGTC
TGTCTTGAAGCTATGGCTGCAGGTTGCCCAGTCATATGCCTAAACATAGGAGGTCCAGCAATTCATGTAACCGAAGAAAC
AGGTTATAAAATTGCCGTACAAACCCCGCAACAGGTCATTGATGATTTAGCATCTGCCCTAGTGCAGATTGCTGGCGATC
CAGATCTATGGAAACACTTTAGTCAGGCCGGGCAGGAGCGCGCTCAGACCCAATTTAGCTGGGAAAGTAAAGGGTTAGCT
CAAGCTAAACTTTATCAGAATCTCCTGCAGACAACATCCCCATAA

Upstream 100 bases:

>100_bases
ACGGTCATCACAAATCATGGCTCAATATACTCCTGAAGCCGCAGCAGAATTCCTTGCTAGCGTTGCTAAAGGCACATTGC
AATAAAGGTGATTTCTGCTA

Downstream 100 bases:

>100_bases
TCTAATGATTCCCCTCACAGATTGATGTATTTTGCCCGCCTATCGGTAGAAAGTCACTTTTTTTATGAATATCATTATTT
TTAATAGTTTATTATTGCCT

Product: glycosyl transferase, group 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MSQRLNVLISAYACRPHEGSEPGVGWNLVLELSKYHRIWVLTRGNNQIPIETELSQHPVSDLNFIYCEPSQVLAKLNQNL
RIVHLHYYLWQLKAYWVAKKLHDEINFDIIHHVTYVRYSTPSFLSFLPPPFIWGPVGGGETTPNQFWQSFSLRGKIYEIL
RESARRLGEVDPFVHQTAARSSLARGTTQDTVDRLKALGASEVEVYSQLGLSTSEIATLNLKSNNHERATRFVSIGRLLH
WKGFHLGLQAFAQANLPENTEYWIIGDGPERQHLQQLAATLQIDHQVKFWSQLSREETLNKLGECLALIHPSLHESGGLV
CLEAMAAGCPVICLNIGGPAIHVTEETGYKIAVQTPQQVIDDLASALVQIAGDPDLWKHFSQAGQERAQTQFSWESKGLA
QAKLYQNLLQTTSP

Sequences:

>Translated_414_residues
MSQRLNVLISAYACRPHEGSEPGVGWNLVLELSKYHRIWVLTRGNNQIPIETELSQHPVSDLNFIYCEPSQVLAKLNQNL
RIVHLHYYLWQLKAYWVAKKLHDEINFDIIHHVTYVRYSTPSFLSFLPPPFIWGPVGGGETTPNQFWQSFSLRGKIYEIL
RESARRLGEVDPFVHQTAARSSLARGTTQDTVDRLKALGASEVEVYSQLGLSTSEIATLNLKSNNHERATRFVSIGRLLH
WKGFHLGLQAFAQANLPENTEYWIIGDGPERQHLQQLAATLQIDHQVKFWSQLSREETLNKLGECLALIHPSLHESGGLV
CLEAMAAGCPVICLNIGGPAIHVTEETGYKIAVQTPQQVIDDLASALVQIAGDPDLWKHFSQAGQERAQTQFSWESKGLA
QAKLYQNLLQTTSP
>Mature_413_residues
SQRLNVLISAYACRPHEGSEPGVGWNLVLELSKYHRIWVLTRGNNQIPIETELSQHPVSDLNFIYCEPSQVLAKLNQNLR
IVHLHYYLWQLKAYWVAKKLHDEINFDIIHHVTYVRYSTPSFLSFLPPPFIWGPVGGGETTPNQFWQSFSLRGKIYEILR
ESARRLGEVDPFVHQTAARSSLARGTTQDTVDRLKALGASEVEVYSQLGLSTSEIATLNLKSNNHERATRFVSIGRLLHW
KGFHLGLQAFAQANLPENTEYWIIGDGPERQHLQQLAATLQIDHQVKFWSQLSREETLNKLGECLALIHPSLHESGGLVC
LEAMAAGCPVICLNIGGPAIHVTEETGYKIAVQTPQQVIDDLASALVQIAGDPDLWKHFSQAGQERAQTQFSWESKGLAQ
AKLYQNLLQTTSP

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 46585; Mature: 46454

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRLNVLISAYACRPHEGSEPGVGWNLVLELSKYHRIWVLTRGNNQIPIETELSQHPVS
CCCHHEEEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEECCCCCCCCC
DLNFIYCEPSQVLAKLNQNLRIVHLHYYLWQLKAYWVAKKLHDEINFDIIHHVTYVRYST
CCEEEEECHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEHEEEEEECC
PSFLSFLPPPFIWGPVGGGETTPNQFWQSFSLRGKIYEILRESARRLGEVDPFVHQTAAR
CHHHHHCCCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
SSLARGTTQDTVDRLKALGASEVEVYSQLGLSTSEIATLNLKSNNHERATRFVSIGRLLH
HHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHHHHHH
WKGFHLGLQAFAQANLPENTEYWIIGDGPERQHLQQLAATLQIDHQVKFWSQLSREETLN
CCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLGECLALIHPSLHESGGLVCLEAMAAGCPVICLNIGGPAIHVTEETGYKIAVQTPQQVI
HHHHHHHHHCCCCCCCCCEEEEHHHHCCCCEEEEECCCCEEEEEECCCCEEEECCHHHHH
DDLASALVQIAGDPDLWKHFSQAGQERAQTQFSWESKGLAQAKLYQNLLQTTSP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQRLNVLISAYACRPHEGSEPGVGWNLVLELSKYHRIWVLTRGNNQIPIETELSQHPVS
CCHHEEEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEECCCCCCCCC
DLNFIYCEPSQVLAKLNQNLRIVHLHYYLWQLKAYWVAKKLHDEINFDIIHHVTYVRYST
CCEEEEECHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEHEEEEEECC
PSFLSFLPPPFIWGPVGGGETTPNQFWQSFSLRGKIYEILRESARRLGEVDPFVHQTAAR
CHHHHHCCCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
SSLARGTTQDTVDRLKALGASEVEVYSQLGLSTSEIATLNLKSNNHERATRFVSIGRLLH
HHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHHHHHH
WKGFHLGLQAFAQANLPENTEYWIIGDGPERQHLQQLAATLQIDHQVKFWSQLSREETLN
CCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLGECLALIHPSLHESGGLVCLEAMAAGCPVICLNIGGPAIHVTEETGYKIAVQTPQQVI
HHHHHHHHHCCCCCCCCCEEEEHHHHCCCCEEEEECCCCEEEEEECCCCEEEECCHHHHH
DDLASALVQIAGDPDLWKHFSQAGQERAQTQFSWESKGLAQAKLYQNLLQTTSP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]