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The map label for this gene is yobQ [H]

Identifier: 158338565

GI number: 158338565

Start: 5525275

End: 5526123

Strand: Reverse

Name: yobQ [H]

Synonym: AM1_5468

Alternate gene names: 158338565

Gene position: 5526123-5525275 (Counterclockwise)

Preceding gene: 158338566

Following gene: 158338564

Centisome position: 84.97

GC content: 48.06

Gene sequence:

>849_bases
ATGTCTTCTTCATCTGATACACTTCAACACACCCTTAATGCACCTATTTTTACCAGCCCTGGTCTAGGGTTTGTCTTTGA
ACATTGCCAGCAACCCCGAACCCAATTACCGGAATGTGTCAATACCGACCATGCCCTCTGTATTGTCCAATCCCATCCCG
GCCAAACGCGAATTACCGTTAATCGTCAGCAGCAGCGCCAGGTGGCCCGACCGGGAGAAATTTGGCTGTTACCTGCACAG
CAGATCACCCAAAGTCAATGGGACGGCCATTTAGACTATTTTCGCTTGTTGATTCGTCCCCAGTGGCTAAGGGAGTTGGC
GAATGATGTGACGGGGGTTCAGCAATACGCCCTAGATTTACAGCTACAAGTCCTCGATCCACTGCTGTTTCAAATTGCCT
TGGCCTTGAATACTGAACTGACTGGCTCTACCCAACCTGATTTTTTGTATGTGGAGAGCTTAAGCCATACCTTGGGACGA
CATTTGTTGCGGCGTTATGCGTCCTGTTCACCTGATCTGCAATGGCAATATTCCAAGGGAGAGTTTCAGGATGCGATCGC
ATATATTCACGACCATCTCCAAGACCCAATTCGCTTAGCGGATCTGGCGAGGGTGGTACATATGAGTCCCAACTACTTTG
CGGAACAGTTCAAGCAGACAATGGGGATTTCTCCCTATCGATATGTCACCCAATGTCGTATTCAAACGGCCCAAAGACTC
CTACGTCATCGACACTTAGCCATCTCAGAAGTTGCCCATCAAGTCGGGATTTCCAATCCTAGTCAATTTTCTCGTCTATT
TCGACAATGGACAGGAATAAGCCCTAGAACCTATAGAGCAAACCTTTGA

Upstream 100 bases:

>100_bases
TATCCAACTGCCAAAACTTGACGGCTCCCCAACAAGAAATGCTCGCATTCCTCGGCGCAATTAGTCAGTCTTGATCCTGC
TCCACGACGTTAGCGATGCC

Downstream 100 bases:

>100_bases
AGGGTTCTGCTTGATCAACTTCTTGGTAGCCTTCGCAAGAAAAGCAATCAGAAGACACAGAATATAAATTCATTCACGTA
GAGATGCAAAGGAACTACCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSSSSDTLQHTLNAPIFTSPGLGFVFEHCQQPRTQLPECVNTDHALCIVQSHPGQTRITVNRQQQRQVARPGEIWLLPAQ
QITQSQWDGHLDYFRLLIRPQWLRELANDVTGVQQYALDLQLQVLDPLLFQIALALNTELTGSTQPDFLYVESLSHTLGR
HLLRRYASCSPDLQWQYSKGEFQDAIAYIHDHLQDPIRLADLARVVHMSPNYFAEQFKQTMGISPYRYVTQCRIQTAQRL
LRHRHLAISEVAHQVGISNPSQFSRLFRQWTGISPRTYRANL

Sequences:

>Translated_282_residues
MSSSSDTLQHTLNAPIFTSPGLGFVFEHCQQPRTQLPECVNTDHALCIVQSHPGQTRITVNRQQQRQVARPGEIWLLPAQ
QITQSQWDGHLDYFRLLIRPQWLRELANDVTGVQQYALDLQLQVLDPLLFQIALALNTELTGSTQPDFLYVESLSHTLGR
HLLRRYASCSPDLQWQYSKGEFQDAIAYIHDHLQDPIRLADLARVVHMSPNYFAEQFKQTMGISPYRYVTQCRIQTAQRL
LRHRHLAISEVAHQVGISNPSQFSRLFRQWTGISPRTYRANL
>Mature_281_residues
SSSSDTLQHTLNAPIFTSPGLGFVFEHCQQPRTQLPECVNTDHALCIVQSHPGQTRITVNRQQQRQVARPGEIWLLPAQQ
ITQSQWDGHLDYFRLLIRPQWLRELANDVTGVQQYALDLQLQVLDPLLFQIALALNTELTGSTQPDFLYVESLSHTLGRH
LLRRYASCSPDLQWQYSKGEFQDAIAYIHDHLQDPIRLADLARVVHMSPNYFAEQFKQTMGISPYRYVTQCRIQTAQRLL
RHRHLAISEVAHQVGISNPSQFSRLFRQWTGISPRTYRANL

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=94, Percent_Identity=32.9787234042553, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786251, Length=232, Percent_Identity=28.448275862069, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32509; Mature: 32378

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSSDTLQHTLNAPIFTSPGLGFVFEHCQQPRTQLPECVNTDHALCIVQSHPGQTRITV
CCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCHHHHCCCCEEEEEECCCCCEEEEE
NRQQQRQVARPGEIWLLPAQQITQSQWDGHLDYFRLLIRPQWLRELANDVTGVQQYALDL
CHHHHHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QLQVLDPLLFQIALALNTELTGSTQPDFLYVESLSHTLGRHLLRRYASCSPDLQWQYSKG
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
EFQDAIAYIHDHLQDPIRLADLARVVHMSPNYFAEQFKQTMGISPYRYVTQCRIQTAQRL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LRHRHLAISEVAHQVGISNPSQFSRLFRQWTGISPRTYRANL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure 
SSSSDTLQHTLNAPIFTSPGLGFVFEHCQQPRTQLPECVNTDHALCIVQSHPGQTRITV
CCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCHHHHCCCCEEEEEECCCCCEEEEE
NRQQQRQVARPGEIWLLPAQQITQSQWDGHLDYFRLLIRPQWLRELANDVTGVQQYALDL
CHHHHHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QLQVLDPLLFQIALALNTELTGSTQPDFLYVESLSHTLGRHLLRRYASCSPDLQWQYSKG
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
EFQDAIAYIHDHLQDPIRLADLARVVHMSPNYFAEQFKQTMGISPYRYVTQCRIQTAQRL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LRHRHLAISEVAHQVGISNPSQFSRLFRQWTGISPRTYRANL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]