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The map label for this gene is nrtA [H]

Identifier: 158338272

GI number: 158338272

Start: 5230768

End: 5232264

Strand: Reverse

Name: nrtA [H]

Synonym: AM1_5168

Alternate gene names: 158338272

Gene position: 5232264-5230768 (Counterclockwise)

Preceding gene: 158338273

Following gene: 158338271

Centisome position: 80.45

GC content: 50.3

Gene sequence:

>1497_bases
ATGCCGAGTGATCCAGTAGAAATGGTTGATGATCTGGCAAAAATGGGTCTATATAAGCCAGATGCTTTTACGATTGCCCA
ATCGATCAGTGAGGCAGAACTGCGCAAGCAATTGTTCTTAAAAATAGTCTGTAAAGGAGACTCTAAAAGAGAACGCTTGG
TCGGTGACTTAATCCAATTAGCAGGGGGGCTGGATCAGGCATTTGCTGCTGCTTTTGGGCCTAAAGCTGGAGACTTCTTT
CGGGATGCTCAACGAACCAGTAGCGTGACTCGCCGGGAATTTCTGCGAAACATTGCGGTAGGGGCCGCCCTAGTTACCCT
GACCAACTGTGCCCCTGGCGGCAACAAGCCCGATATTGGGGATACCAATGTAGACCCTGAATTAACCGCCAAGCTGGAGA
AAACGGAGCTTAAGGTGGGCTTTATTCCCATTACCTGCGCAACGCCGATTATTATGTCTGAGCCGTTAGGGTTCTACAAA
AAGCATGGTTTGAATGCCAAAGTGGTCAAAATGCCGAGTTGGGGGGCGGTGCGAGACTCTGCGATCGCAGGTGAACTGGA
CGCGTATCACATGCTAGCCCCCATGCCCATCGCCATGACTTTGGGATTAGGGTCTAGCTCCTTTGGCGTCAAGCTGGCTA
GTATCGAGAATATTAATGGCCAAGCGATTACGGTGGCCAACCGCCATAAAGGTAAAGTCAAAGGTCCGGCGGACTTCAAG
GGGTTTGTGATCGGCGTTCCCTTCCCCTACTCCATGCATAACCTTCTGCTGCGCTACTACCTTGCTACGGGGGGAATTGA
CCCCGATAAAGATGTCAAGATTCGTCCTGTTCCCCCGCCCGACAGTATTGCCCAATTGGTGGCCGGTGATATTGATGCCT
ACTTAATGCCGGATCCCTTCAACCAGCGAGCCGTCTTCGAGGGTGAAGGATTTATCCACAAATTAACGAAAGATTTATGG
CCCAATCATCCCTGCTGTGCTTTTGCCGCCAGTGACGAATGGATCGACGCCAATCCCAACACCTTCCGAGCCTTAAACAA
GTCGATTATCGAAGCAGCAGGCTATGCCAGCAAGGCCGAAAATCGACCCGAAATTGCCAAGGCGATTTCTGAAAGAGCTT
TCTTGAACCAGCCAACGGAAGTCGTGGAAGCCGTTCTGACGGGCAAGTTTGACGATGGTAATGGTCAAACCCTGGACATT
CCCGATCGGATTGACTTTGACCCCTATCCTTGGCAAAGCTTTGCCAACTGGATTTCGTCGCAGCTCGTGCGCTGGGACTT
GCAAGGGGATGGCAAAGCCAAAACTGCCATTGATGGCAAGTATGACGAAGTAGGCAAAGATATTTTCCTCACCGATGTGG
CTCGTGAACTGGCGACGGAACTAGGGCAGACTCCGCCTGACGAAATCTATAAAACTGAAACGCTGGCCTTTGATGAATTT
GATCCGGCAAATCCAGCCCAATACATCGAAGAGCAAATCAAGAAATATGATGTTTAA

Upstream 100 bases:

>100_bases
TTTCAAGGCTCAGCGAGAGAGTCCTACTCAAGTTCCACCAAGTTGTCTAGTCTGCGGAGGTGTTCACTTTACACAAGACC
ATTGGCAGCACCTCGCAACG

Downstream 100 bases:

>100_bases
TCCCAGAAATCATGGCCCTGAGTACTGATCAAAGCCCCAAAGCCCCCACCAAACCAGGACTCTCTGAGAATGCTCAAGCA
ATCCTGATTTCCCTGCTGTT

Product: nitrate ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MPSDPVEMVDDLAKMGLYKPDAFTIAQSISEAELRKQLFLKIVCKGDSKRERLVGDLIQLAGGLDQAFAAAFGPKAGDFF
RDAQRTSSVTRREFLRNIAVGAALVTLTNCAPGGNKPDIGDTNVDPELTAKLEKTELKVGFIPITCATPIIMSEPLGFYK
KHGLNAKVVKMPSWGAVRDSAIAGELDAYHMLAPMPIAMTLGLGSSSFGVKLASIENINGQAITVANRHKGKVKGPADFK
GFVIGVPFPYSMHNLLLRYYLATGGIDPDKDVKIRPVPPPDSIAQLVAGDIDAYLMPDPFNQRAVFEGEGFIHKLTKDLW
PNHPCCAFAASDEWIDANPNTFRALNKSIIEAAGYASKAENRPEIAKAISERAFLNQPTEVVEAVLTGKFDDGNGQTLDI
PDRIDFDPYPWQSFANWISSQLVRWDLQGDGKAKTAIDGKYDEVGKDIFLTDVARELATELGQTPPDEIYKTETLAFDEF
DPANPAQYIEEQIKKYDV

Sequences:

>Translated_498_residues
MPSDPVEMVDDLAKMGLYKPDAFTIAQSISEAELRKQLFLKIVCKGDSKRERLVGDLIQLAGGLDQAFAAAFGPKAGDFF
RDAQRTSSVTRREFLRNIAVGAALVTLTNCAPGGNKPDIGDTNVDPELTAKLEKTELKVGFIPITCATPIIMSEPLGFYK
KHGLNAKVVKMPSWGAVRDSAIAGELDAYHMLAPMPIAMTLGLGSSSFGVKLASIENINGQAITVANRHKGKVKGPADFK
GFVIGVPFPYSMHNLLLRYYLATGGIDPDKDVKIRPVPPPDSIAQLVAGDIDAYLMPDPFNQRAVFEGEGFIHKLTKDLW
PNHPCCAFAASDEWIDANPNTFRALNKSIIEAAGYASKAENRPEIAKAISERAFLNQPTEVVEAVLTGKFDDGNGQTLDI
PDRIDFDPYPWQSFANWISSQLVRWDLQGDGKAKTAIDGKYDEVGKDIFLTDVARELATELGQTPPDEIYKTETLAFDEF
DPANPAQYIEEQIKKYDV
>Mature_497_residues
PSDPVEMVDDLAKMGLYKPDAFTIAQSISEAELRKQLFLKIVCKGDSKRERLVGDLIQLAGGLDQAFAAAFGPKAGDFFR
DAQRTSSVTRREFLRNIAVGAALVTLTNCAPGGNKPDIGDTNVDPELTAKLEKTELKVGFIPITCATPIIMSEPLGFYKK
HGLNAKVVKMPSWGAVRDSAIAGELDAYHMLAPMPIAMTLGLGSSSFGVKLASIENINGQAITVANRHKGKVKGPADFKG
FVIGVPFPYSMHNLLLRYYLATGGIDPDKDVKIRPVPPPDSIAQLVAGDIDAYLMPDPFNQRAVFEGEGFIHKLTKDLWP
NHPCCAFAASDEWIDANPNTFRALNKSIIEAAGYASKAENRPEIAKAISERAFLNQPTEVVEAVLTGKFDDGNGQTLDIP
DRIDFDPYPWQSFANWISSQLVRWDLQGDGKAKTAIDGKYDEVGKDIFLTDVARELATELGQTPPDEIYKTETLAFDEFD
PANPAQYIEEQIKKYDV

Specific function: Essential component of the nitrate-transporting system. May be the substrate-binding protein [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CmpA/NrtA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54490; Mature: 54358

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDPVEMVDDLAKMGLYKPDAFTIAQSISEAELRKQLFLKIVCKGDSKRERLVGDLIQL
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHH
AGGLDQAFAAAFGPKAGDFFRDAQRTSSVTRREFLRNIAVGAALVTLTNCAPGGNKPDIG
HCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DTNVDPELTAKLEKTELKVGFIPITCATPIIMSEPLGFYKKHGLNAKVVKMPSWGAVRDS
CCCCCHHHHHHEECCEEEEEEEEHHHCCCHHHCCCCCHHHHCCCCEEEEECCCCCCCCCC
AIAGELDAYHMLAPMPIAMTLGLGSSSFGVKLASIENINGQAITVANRHKGKVKGPADFK
HHHCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCC
GFVIGVPFPYSMHNLLLRYYLATGGIDPDKDVKIRPVPPPDSIAQLVAGDIDAYLMPDPF
CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCEEECCCCC
NQRAVFEGEGFIHKLTKDLWPNHPCCAFAASDEWIDANPNTFRALNKSIIEAAGYASKAE
CCCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHCCC
NRPEIAKAISERAFLNQPTEVVEAVLTGKFDDGNGQTLDIPDRIDFDPYPWQSFANWISS
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHH
QLVRWDLQGDGKAKTAIDGKYDEVGKDIFLTDVARELATELGQTPPDEIYKTETLAFDEF
HHEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHEEECCC
DPANPAQYIEEQIKKYDV
CCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSDPVEMVDDLAKMGLYKPDAFTIAQSISEAELRKQLFLKIVCKGDSKRERLVGDLIQL
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHH
AGGLDQAFAAAFGPKAGDFFRDAQRTSSVTRREFLRNIAVGAALVTLTNCAPGGNKPDIG
HCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DTNVDPELTAKLEKTELKVGFIPITCATPIIMSEPLGFYKKHGLNAKVVKMPSWGAVRDS
CCCCCHHHHHHEECCEEEEEEEEHHHCCCHHHCCCCCHHHHCCCCEEEEECCCCCCCCCC
AIAGELDAYHMLAPMPIAMTLGLGSSSFGVKLASIENINGQAITVANRHKGKVKGPADFK
HHHCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCC
GFVIGVPFPYSMHNLLLRYYLATGGIDPDKDVKIRPVPPPDSIAQLVAGDIDAYLMPDPF
CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCEEECCCCC
NQRAVFEGEGFIHKLTKDLWPNHPCCAFAASDEWIDANPNTFRALNKSIIEAAGYASKAE
CCCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHCCC
NRPEIAKAISERAFLNQPTEVVEAVLTGKFDDGNGQTLDIPDRIDFDPYPWQSFANWISS
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHH
QLVRWDLQGDGKAKTAIDGKYDEVGKDIFLTDVARELATELGQTPPDEIYKTETLAFDEF
HHEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHEEECCC
DPANPAQYIEEQIKKYDV
CCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8990301; 11759840; 8982006 [H]