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The map label for this gene is ureD

Identifier: 158338209

GI number: 158338209

Start: 5156926

End: 5157777

Strand: Direct

Name: ureD

Synonym: AM1_5103

Alternate gene names: 158338209

Gene position: 5156926-5157777 (Clockwise)

Preceding gene: 158338207

Following gene: 158338210

Centisome position: 79.29

GC content: 54.81

Gene sequence:

>852_bases
ATGCAGCAACTTGAAAAACAGTCAGACTTGGCAAGCTGGCATGGTCGTCTAAGCTTAACCTACGAGAAAAAAGCTCACCA
AACTCAGGTTCAGCAGAGCTATCATCAAGCCCCTCTCAATCTACAACGCCCTTTTTATCCTGAAGGGCCAGTTTGCCATA
GCGTCATGATGCATACCGCTGGGGGCATGGTGGGCGGCGATCGTCTCTCCATTAATGTGACGCTGCAGCCCCAGACCCAT
GCGCTACTGACAACAACATCTGCAGGCAAAGTCTATCGGTCTAATGGTCATGGAGCCCAACAGACGGTCCAGTGCCAGCT
GGATACTAACGCGATTCTAGAATGGCTGCCCTTAGGAACAATCGTCTTTGACCAGGCTCAGTTTCGCCAAACCTTACAGG
TTGAGCTTGGCCCTGGGGCTATTTTTTGCGGATGGGATCTGACTCGATTTGGTCGCAGTGCCCGAGGTGAGCGATTTATG
CAGGGGGACTGGCGATCTCATACTGAGATTTGGCAGCAGGGCGCGCCCCTCTGGATTGATCGACAGTGGTTGCCGGGGCA
ACCGGACATTTGGGAAAGCCCCCATGGCTTGGCTGGACAACCGGTTGTTGGCAGTTTTCTGTGGGTCGGACAAGGGGTTG
AACCCAATCTGGTCCAGACGGCTCGTGACCTTTGGCAGCCCACTACCGATGGGGCTGAGATGGGGGTAACGCGCTTACCC
CTTGGACTGGTCTGCCGATATCGTGGTCCCTCTAGTCAAGCGGCCCGTCAATGGTTTATACAGGTGTGGAATCTGTTGCG
ATCCACCCATTTGGGACGCCCAGCCTGTCCTCCCCGTGTTTGGCCACTCTAA

Upstream 100 bases:

>100_bases
AAAAAACATCAAATGTATAATTTGCCTGGCTTCTAGAGAATAAATGATAAATTATTGAGACGCCTCAACCCCTTTAGCTG
AATATCTCTGTTATCGACCC

Downstream 100 bases:

>100_bases
AACGAGGTAACCCATGCAGCTCACTCCCCAGGAAAAAGATAAATTGCTCGTGTTTACCGCGGCACTGTTAGCAGAACGGC
GGAAGAACCGAGGTATCAAG

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MQQLEKQSDLASWHGRLSLTYEKKAHQTQVQQSYHQAPLNLQRPFYPEGPVCHSVMMHTAGGMVGGDRLSINVTLQPQTH
ALLTTTSAGKVYRSNGHGAQQTVQCQLDTNAILEWLPLGTIVFDQAQFRQTLQVELGPGAIFCGWDLTRFGRSARGERFM
QGDWRSHTEIWQQGAPLWIDRQWLPGQPDIWESPHGLAGQPVVGSFLWVGQGVEPNLVQTARDLWQPTTDGAEMGVTRLP
LGLVCRYRGPSSQAARQWFIQVWNLLRSTHLGRPACPPRVWPL

Sequences:

>Translated_283_residues
MQQLEKQSDLASWHGRLSLTYEKKAHQTQVQQSYHQAPLNLQRPFYPEGPVCHSVMMHTAGGMVGGDRLSINVTLQPQTH
ALLTTTSAGKVYRSNGHGAQQTVQCQLDTNAILEWLPLGTIVFDQAQFRQTLQVELGPGAIFCGWDLTRFGRSARGERFM
QGDWRSHTEIWQQGAPLWIDRQWLPGQPDIWESPHGLAGQPVVGSFLWVGQGVEPNLVQTARDLWQPTTDGAEMGVTRLP
LGLVCRYRGPSSQAARQWFIQVWNLLRSTHLGRPACPPRVWPL
>Mature_283_residues
MQQLEKQSDLASWHGRLSLTYEKKAHQTQVQQSYHQAPLNLQRPFYPEGPVCHSVMMHTAGGMVGGDRLSINVTLQPQTH
ALLTTTSAGKVYRSNGHGAQQTVQCQLDTNAILEWLPLGTIVFDQAQFRQTLQVELGPGAIFCGWDLTRFGRSARGERFM
QGDWRSHTEIWQQGAPLWIDRQWLPGQPDIWESPHGLAGQPVVGSFLWVGQGVEPNLVQTARDLWQPTTDGAEMGVTRLP
LGLVCRYRGPSSQAARQWFIQVWNLLRSTHLGRPACPPRVWPL

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:
GO:0005737: Urease accessory protein ureD
GO:0006807: Urease accessory protein ureD
GO:0016151: Urease accessory protein ureD

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_ACAM1 (B0C790)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001519386.1
- GeneID:   5683900
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_5103
- HOGENOM:   HBG711156
- OMA:   CLGRPVM
- ProtClustDB:   CLSK896018
- BioCyc:   AMAR329726:AM1_5103-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31817; Mature: 31817

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLEKQSDLASWHGRLSLTYEKKAHQTQVQQSYHQAPLNLQRPFYPEGPVCHSVMMHTA
CCHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
GGMVGGDRLSINVTLQPQTHALLTTTSAGKVYRSNGHGAQQTVQCQLDTNAILEWLPLGT
CCCCCCCEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEEEECHHHHHHHHCCCH
IVFDQAQFRQTLQVELGPGAIFCGWDLTRFGRSARGERFMQGDWRSHTEIWQQGAPLWID
HEECHHHHHEEEEEEECCCEEEECCCHHHHCCCCCCCCHHCCCCHHHHHHHHCCCCEEEE
RQWLPGQPDIWESPHGLAGQPVVGSFLWVGQGVEPNLVQTARDLWQPTTDGAEMGVTRLP
CCCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHCCCCCCCHHCCHHHCC
LGLVCRYRGPSSQAARQWFIQVWNLLRSTHLGRPACPPRVWPL
CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQQLEKQSDLASWHGRLSLTYEKKAHQTQVQQSYHQAPLNLQRPFYPEGPVCHSVMMHTA
CCHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
GGMVGGDRLSINVTLQPQTHALLTTTSAGKVYRSNGHGAQQTVQCQLDTNAILEWLPLGT
CCCCCCCEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEEEECHHHHHHHHCCCH
IVFDQAQFRQTLQVELGPGAIFCGWDLTRFGRSARGERFMQGDWRSHTEIWQQGAPLWID
HEECHHHHHEEEEEEECCCEEEECCCHHHHCCCCCCCCHHCCCCHHHHHHHHCCCCEEEE
RQWLPGQPDIWESPHGLAGQPVVGSFLWVGQGVEPNLVQTARDLWQPTTDGAEMGVTRLP
CCCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHCCCCCCCHHCCHHHCC
LGLVCRYRGPSSQAARQWFIQVWNLLRSTHLGRPACPPRVWPL
CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA