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The map label for this gene is trg [C]

Identifier: 158338185

GI number: 158338185

Start: 5130646

End: 5132004

Strand: Reverse

Name: trg [C]

Synonym: AM1_5078

Alternate gene names: 158338185

Gene position: 5132004-5130646 (Counterclockwise)

Preceding gene: 158338186

Following gene: 158338184

Centisome position: 78.91

GC content: 48.64

Gene sequence:

>1359_bases
ATGAAAATTACAAACCAACTCCGATGGACCGTTGCAGGCTTGACGGTTTTTGCCCTAGGCACCACTGCTTACACCGTTAG
CAACATCGGTCGCAACACAAACGACGGTACGGTTGTGAACAATGCAGGTATTGTTCGGGGGGCCACCCAGCGCTTGGTCA
AATTGGAAACGAATGGCAAACCGGATAATCAACTTCGCCAGAAAATTGATGGTCTCATCAACGGCTTGATTAACGGAGAT
GCTGAACTGGGTTTGCCCAAGGCCACAGATGCCGCGTTCCTAGACAAAATTCAGGCTGTAGAAGCTGAATGGCAAGTATT
GGGACAGATGATTGAGCAATATCGGTCAAATCCTAGTATGAAAGCTCAGGTCATTAATGAGAGCGAAAAATTTTTTGAGT
TAACCAACGAAGCTGTGTCTGCCGCTGAAAATGCAGCCACCAATAACGTTCAAGGGCTAAGCAATACCCAGTACGTTGTG
TTGGCCTTGAACTTGATCGTTCTAGGATTTATTTTCTGGACCATTCAACAAGCTTCAAAAGTATTGACCAATTCCGTCGG
ATCTGTGGCCACCAGCTCTTACGCCATTGCGGAAACCGTTGGCAAACAAGAGCAAATCATCAACGAACAAACCCAATCCG
TTAAAGATACAACGGTCACCATTGAAGGGCTAGGGATGTCTTCCATGCAAGCGGCCCAGCAAGCTGATTTATCAGCCAAA
GGGGCCCAGGAAGCCCTAGAACTCTCTAAGAATGGAGCCCAATCCGTGGCTGAGACGGTGGAAGGGATTGGCGAACTCCG
AACCAAAGTAGGAGAAATTGCTGAACAAATTATGCAGTTGAGTGAACAAACGGGACAGATTTCGACGGTGTCTCAGCTGG
TGGCTGGCATTGCGGACCAAACGAACATGCTGGCCCTAAACGCAGCGGTGGAAGCAGCCCGAGCTGGTGAAGAAGGAAAA
GGTTTCGCGGTGGTTGCCGGTGAAATTCGAAAGCTGGCGGACCAAAGCCGCAGTTCGGCTGACAAGATTAATACTTTGGT
TGCGGATATTCAAGCTTCGATTAATAGCACTGTGATGGTAACCGATGAAGGGACCAAAACGGCAACGAAGGGGATTGAAC
TAGCGGAATCCACCAATGACGTGATTGTCAAAATGGCCCAGTCCATTCAGGAGGTGTTTGAAAGTAGTCAAACGATTGCT
CAGAGTTCTAAACAGCAGGCGGTCGTGGTTCAGCAAGCGGTTTCCGCGATTAACACCATTAACCTGGGTGCCCAAGAAAC
CGCCTCTGCCGTGAGTGAGGTGAATACCACTACAGAACAGCTGACTGACGTTGCTCAACAATTGGCTGTTACGGTTTAA

Upstream 100 bases:

>100_bases
ATCTGAACCTAGGGCCAGGGATGGCCGATCAATCTTTTTATGACCGCTATTTGCGGACTTCGTATCAAACCTTTACTAGT
CAAAGGACACCAGCAATTCA

Downstream 100 bases:

>100_bases
GACCGCCTTATTTTTAGGAAAGAAACCCTTGATTGTCTGGGATCTTTCGACTCCAAAGCGAAAGCTCTTTCCTGCTTTTC
CCCACCCTTTATCTAAGCAA

Product: methyl-accepting chemotaxis signaling domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKITNQLRWTVAGLTVFALGTTAYTVSNIGRNTNDGTVVNNAGIVRGATQRLVKLETNGKPDNQLRQKIDGLINGLINGD
AELGLPKATDAAFLDKIQAVEAEWQVLGQMIEQYRSNPSMKAQVINESEKFFELTNEAVSAAENAATNNVQGLSNTQYVV
LALNLIVLGFIFWTIQQASKVLTNSVGSVATSSYAIAETVGKQEQIINEQTQSVKDTTVTIEGLGMSSMQAAQQADLSAK
GAQEALELSKNGAQSVAETVEGIGELRTKVGEIAEQIMQLSEQTGQISTVSQLVAGIADQTNMLALNAAVEAARAGEEGK
GFAVVAGEIRKLADQSRSSADKINTLVADIQASINSTVMVTDEGTKTATKGIELAESTNDVIVKMAQSIQEVFESSQTIA
QSSKQQAVVVQQAVSAINTINLGAQETASAVSEVNTTTEQLTDVAQQLAVTV

Sequences:

>Translated_452_residues
MKITNQLRWTVAGLTVFALGTTAYTVSNIGRNTNDGTVVNNAGIVRGATQRLVKLETNGKPDNQLRQKIDGLINGLINGD
AELGLPKATDAAFLDKIQAVEAEWQVLGQMIEQYRSNPSMKAQVINESEKFFELTNEAVSAAENAATNNVQGLSNTQYVV
LALNLIVLGFIFWTIQQASKVLTNSVGSVATSSYAIAETVGKQEQIINEQTQSVKDTTVTIEGLGMSSMQAAQQADLSAK
GAQEALELSKNGAQSVAETVEGIGELRTKVGEIAEQIMQLSEQTGQISTVSQLVAGIADQTNMLALNAAVEAARAGEEGK
GFAVVAGEIRKLADQSRSSADKINTLVADIQASINSTVMVTDEGTKTATKGIELAESTNDVIVKMAQSIQEVFESSQTIA
QSSKQQAVVVQQAVSAINTINLGAQETASAVSEVNTTTEQLTDVAQQLAVTV
>Mature_452_residues
MKITNQLRWTVAGLTVFALGTTAYTVSNIGRNTNDGTVVNNAGIVRGATQRLVKLETNGKPDNQLRQKIDGLINGLINGD
AELGLPKATDAAFLDKIQAVEAEWQVLGQMIEQYRSNPSMKAQVINESEKFFELTNEAVSAAENAATNNVQGLSNTQYVV
LALNLIVLGFIFWTIQQASKVLTNSVGSVATSSYAIAETVGKQEQIINEQTQSVKDTTVTIEGLGMSSMQAAQQADLSAK
GAQEALELSKNGAQSVAETVEGIGELRTKVGEIAEQIMQLSEQTGQISTVSQLVAGIADQTNMLALNAAVEAARAGEEGK
GFAVVAGEIRKLADQSRSSADKINTLVADIQASINSTVMVTDEGTKTATKGIELAESTNDVIVKMAQSIQEVFESSQTIA
QSSKQQAVVVQQAVSAINTINLGAQETASAVSEVNTTTEQLTDVAQQLAVTV

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=241, Percent_Identity=33.6099585062241, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788194, Length=214, Percent_Identity=34.5794392523364, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789453, Length=280, Percent_Identity=32.5, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788195, Length=223, Percent_Identity=30.0448430493274, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI2367378, Length=141, Percent_Identity=39.0070921985816, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003018
- InterPro:   IPR003660
- InterPro:   IPR016132 [H]

Pfam domain/function: PF01590 GAF; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 47741; Mature: 47741

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITNQLRWTVAGLTVFALGTTAYTVSNIGRNTNDGTVVNNAGIVRGATQRLVKLETNGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHEEEECCCC
PDNQLRQKIDGLINGLINGDAELGLPKATDAAFLDKIQAVEAEWQVLGQMIEQYRSNPSM
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KAQVINESEKFFELTNEAVSAAENAATNNVQGLSNTQYVVLALNLIVLGFIFWTIQQASK
CHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLTNSVGSVATSSYAIAETVGKQEQIINEQTQSVKDTTVTIEGLGMSSMQAAQQADLSAK
HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCHH
GAQEALELSKNGAQSVAETVEGIGELRTKVGEIAEQIMQLSEQTGQISTVSQLVAGIADQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
TNMLALNAAVEAARAGEEGKGFAVVAGEIRKLADQSRSSADKINTLVADIQASINSTVMV
CCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TDEGTKTATKGIELAESTNDVIVKMAQSIQEVFESSQTIAQSSKQQAVVVQQAVSAINTI
ECCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLGAQETASAVSEVNTTTEQLTDVAQQLAVTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKITNQLRWTVAGLTVFALGTTAYTVSNIGRNTNDGTVVNNAGIVRGATQRLVKLETNGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHEEEECCCC
PDNQLRQKIDGLINGLINGDAELGLPKATDAAFLDKIQAVEAEWQVLGQMIEQYRSNPSM
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KAQVINESEKFFELTNEAVSAAENAATNNVQGLSNTQYVVLALNLIVLGFIFWTIQQASK
CHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLTNSVGSVATSSYAIAETVGKQEQIINEQTQSVKDTTVTIEGLGMSSMQAAQQADLSAK
HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCHH
GAQEALELSKNGAQSVAETVEGIGELRTKVGEIAEQIMQLSEQTGQISTVSQLVAGIADQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
TNMLALNAAVEAARAGEEGKGFAVVAGEIRKLADQSRSSADKINTLVADIQASINSTVMV
CCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TDEGTKTATKGIELAESTNDVIVKMAQSIQEVFESSQTIAQSSKQQAVVVQQAVSAINTI
ECCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLGAQETASAVSEVNTTTEQLTDVAQQLAVTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]