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The map label for this gene is ppiA [C]

Identifier: 158338155

GI number: 158338155

Start: 5092243

End: 5093427

Strand: Direct

Name: ppiA [C]

Synonym: AM1_5047

Alternate gene names: 158338155

Gene position: 5092243-5093427 (Clockwise)

Preceding gene: 158338153

Following gene: 158338157

Centisome position: 78.3

GC content: 47.26

Gene sequence:

>1185_bases
ATGCAAGTATGTTCTAGGCAAGGCTGGCGAGTTATTTACCAGCGACTGATAAGACTTGTAATCAGCATTATTTTTATCTG
GAACGTTATTTCTATAGGCTGGCTGAACCCCACGACCAAAGTGTGTTGGGCTGCTCTACCGGTTGGGGATGCCGTCAATC
CCATGAGTATTTTGAGGCTGGCATTGCCCGTGGATAACGAAGCCATTCAAACTCTTCATCAATACTTAGAAGAGATGCCT
CCTCAACTTGAGGATCCAGCTGCGCGATTACAACCCAAACAATGGTTTGAAATTGGCAATAAGGTCACACAGATCATTCA
AACCTTTAATAAAGACGCATCCGATCTTCTTGCTGCCATTCCACCTTCCTTTCGGCCCCAGGCTTTGGTCCGCATGAATC
AAATTAATGCAGCTCTCGCGGATCTTAAGATCCTATCTGACCAGCAAAATAAAGAAAAATTTGTGGCAAGACGCACCCAA
GCCTGGAATTCAGTGGATTTGCTGGCAGCGTCTATGGAGCCACAAATTCCTGTCAACATACCGAATGACTACCAAACGCT
GCCTCATCTGAAGGGAAGAGCAGTTGTGGTTCTTGACACTAGTAAGGGGCCAATCACCATGATGGTGGATGGTTATAACG
CGCCTATTACTGCTGGTAACTTTCTGGATCTCGTTCAGCGAGAGTTCTATGACGATCTAACATTTACCCGTGAAGATGGG
GCCTATGTGGTGCAAACAGGGAATCCAGGGGGAGCCCAAGCTGGATTTGTGGATCCAGAGACCAGCCAATATCGCTCTAT
TCCTTTGGAGGTTAGGGTCAAGGGGGATTCTGAACCGGTGTACGGATCCACTTTAGAAGAGTTAGGCTTGTCTGATCCTG
TTCTTCCCTTTTCTGCCTATGGGACCGTCGCCATGGGGCATCCTGCTGGCGACCCTAATGGTGGTTCCTCTGAATTTTTC
TTTCACTTATTTGAGCCTGAATTGACCTCTGCAGGACTAAATTTGCTGGATGGCCAATATGCCGTTTTTGGCTATGTGGT
TGCGGGACAAGATGTATTAGCTCAATTACGTCATGGCGATCATCTGCATTCCGCCCGGGTGGTTGATATTTCTCCACCCA
ATGGCTTCACCTTACGCTATCTGGATTGGATTCTAGTGCAAAAGAGTCCGATGCCTTTGGCTTAA

Upstream 100 bases:

>100_bases
ATTCCATCCGTTCATTCCATCATGAAAGTCACTCTTAAGACGGTTGATCACGGGTAAACCATTATTGCCCGCTTGTTTCC
AATATTGGAGGCAATCCACC

Downstream 100 bases:

>100_bases
AACGTTTTTCCATTACCAAGAGCTGAATTGATTACATCAAAATTTATTTTCTATCCATAACTCATAACTTTAATCATGAA
TAATCAACAATCGAACTTTT

Product: cyclophilin-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: Putative thylakoid lumen PPIase; Putative thylakoid lumen rotamase [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MQVCSRQGWRVIYQRLIRLVISIIFIWNVISIGWLNPTTKVCWAALPVGDAVNPMSILRLALPVDNEAIQTLHQYLEEMP
PQLEDPAARLQPKQWFEIGNKVTQIIQTFNKDASDLLAAIPPSFRPQALVRMNQINAALADLKILSDQQNKEKFVARRTQ
AWNSVDLLAASMEPQIPVNIPNDYQTLPHLKGRAVVVLDTSKGPITMMVDGYNAPITAGNFLDLVQREFYDDLTFTREDG
AYVVQTGNPGGAQAGFVDPETSQYRSIPLEVRVKGDSEPVYGSTLEELGLSDPVLPFSAYGTVAMGHPAGDPNGGSSEFF
FHLFEPELTSAGLNLLDGQYAVFGYVVAGQDVLAQLRHGDHLHSARVVDISPPNGFTLRYLDWILVQKSPMPLA

Sequences:

>Translated_394_residues
MQVCSRQGWRVIYQRLIRLVISIIFIWNVISIGWLNPTTKVCWAALPVGDAVNPMSILRLALPVDNEAIQTLHQYLEEMP
PQLEDPAARLQPKQWFEIGNKVTQIIQTFNKDASDLLAAIPPSFRPQALVRMNQINAALADLKILSDQQNKEKFVARRTQ
AWNSVDLLAASMEPQIPVNIPNDYQTLPHLKGRAVVVLDTSKGPITMMVDGYNAPITAGNFLDLVQREFYDDLTFTREDG
AYVVQTGNPGGAQAGFVDPETSQYRSIPLEVRVKGDSEPVYGSTLEELGLSDPVLPFSAYGTVAMGHPAGDPNGGSSEFF
FHLFEPELTSAGLNLLDGQYAVFGYVVAGQDVLAQLRHGDHLHSARVVDISPPNGFTLRYLDWILVQKSPMPLA
>Mature_394_residues
MQVCSRQGWRVIYQRLIRLVISIIFIWNVISIGWLNPTTKVCWAALPVGDAVNPMSILRLALPVDNEAIQTLHQYLEEMP
PQLEDPAARLQPKQWFEIGNKVTQIIQTFNKDASDLLAAIPPSFRPQALVRMNQINAALADLKILSDQQNKEKFVARRTQ
AWNSVDLLAASMEPQIPVNIPNDYQTLPHLKGRAVVVLDTSKGPITMMVDGYNAPITAGNFLDLVQREFYDDLTFTREDG
AYVVQTGNPGGAQAGFVDPETSQYRSIPLEVRVKGDSEPVYGSTLEELGLSDPVLPFSAYGTVAMGHPAGDPNGGSSEFF
FHLFEPELTSAGLNLLDGQYAVFGYVVAGQDVLAQLRHGDHLHSARVVDISPPNGFTLRYLDWILVQKSPMPLA

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII [H]

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cellular thylakoid lumen (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR002130
- InterPro:   IPR023222 [H]

Pfam domain/function: PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 43579; Mature: 43579

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50072 CSA_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVCSRQGWRVIYQRLIRLVISIIFIWNVISIGWLNPTTKVCWAALPVGDAVNPMSILRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCCCHHHHHHH
ALPVDNEAIQTLHQYLEEMPPQLEDPAARLQPKQWFEIGNKVTQIIQTFNKDASDLLAAI
HCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
PPSFRPQALVRMNQINAALADLKILSDQQNKEKFVARRTQAWNSVDLLAASMEPQIPVNI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCC
PNDYQTLPHLKGRAVVVLDTSKGPITMMVDGYNAPITAGNFLDLVQREFYDDLTFTREDG
CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEECCC
AYVVQTGNPGGAQAGFVDPETSQYRSIPLEVRVKGDSEPVYGSTLEELGLSDPVLPFSAY
EEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
GTVAMGHPAGDPNGGSSEFFFHLFEPELTSAGLNLLDGQYAVFGYVVAGQDVLAQLRHGD
CCEEECCCCCCCCCCCCCEEEEEECCCHHHCCCHHCCCCEEEEEEEECCHHHHHHHHCCC
HLHSARVVDISPPNGFTLRYLDWILVQKSPMPLA
CCCCEEEEEECCCCCCCHHEEEEEEEECCCCCCC
>Mature Secondary Structure
MQVCSRQGWRVIYQRLIRLVISIIFIWNVISIGWLNPTTKVCWAALPVGDAVNPMSILRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCCCHHHHHHH
ALPVDNEAIQTLHQYLEEMPPQLEDPAARLQPKQWFEIGNKVTQIIQTFNKDASDLLAAI
HCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
PPSFRPQALVRMNQINAALADLKILSDQQNKEKFVARRTQAWNSVDLLAASMEPQIPVNI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCC
PNDYQTLPHLKGRAVVVLDTSKGPITMMVDGYNAPITAGNFLDLVQREFYDDLTFTREDG
CCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEECCC
AYVVQTGNPGGAQAGFVDPETSQYRSIPLEVRVKGDSEPVYGSTLEELGLSDPVLPFSAY
EEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
GTVAMGHPAGDPNGGSSEFFFHLFEPELTSAGLNLLDGQYAVFGYVVAGQDVLAQLRHGD
CCEEECCCCCCCCCCCCCEEEEEECCCHHHCCCHHCCCCEEEEEEEECCHHHHHHHHCCC
HLHSARVVDISPPNGFTLRYLDWILVQKSPMPLA
CCCCEEEEEECCCCCCCHHEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]