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The map label for this gene is ybfL [H]

Identifier: 158338116

GI number: 158338116

Start: 5053763

End: 5054917

Strand: Direct

Name: ybfL [H]

Synonym: AM1_5006

Alternate gene names: 158338116

Gene position: 5053763-5054917 (Clockwise)

Preceding gene: 158338110

Following gene: 158338117

Centisome position: 77.71

GC content: 49.26

Gene sequence:

>1155_bases
ATGACATCCTCTCCCTTTGCCTCAATTATTGAACACTTCAGCGACTTAGACGACCCGAGAGCAGCCCACCGCATAGAGTA
TTCGCTAGAAGATATCATCTTCATCACCCTATGCGCTGTCCTTTGTGGAGCAGATAATTGGGTGGAAGTGGCCAACTATG
GTTGTTCCAAAGCCCAGTGGTTAAAGCAATGGATAGCATTGCCAAACGGTATTCCCTCCCATGACACCTTCGAGTGGGTC
TTTGCCAGATTGAAACCTCAACAATTGCAGCAGTGCTTTCTCAATTGGACTCAAGCCATCTATCATCTGAGCGCAGGAGC
ACTGATTGCCATTGACGGTAAGACGCTGCGGGGCGCGATTGCAACCGGTGAGCAGCGCAGCTTGATTCACATGGTCAGTG
CATGGGCCAGTCACAATCGTCTCGTTTTAGGTCAACGCACCGTTGAGGAGAAATCTAATGAGATTACGGCTATCCCTGAA
TTACTGAAAATCCTAGAGCTTGAAGGAGCTTTGGTCAGTATTGACGCGATGGGCTGTCAAACCGCGATTGCCGAGACGAT
TATTGAGGGCCAAGGGGATTATGTGTTGGCCCTCAAAGGCAATCAAGGTGATTTATATAACGATGTGGTGCAACTGTTTG
ACCATGCTTGTCAGACTCAATTTCAGGGGATTGAGCATGATAGCTATCAAACCGTCGAGAAAGGGCATGGGCGAATTGAG
CATCGCACCTATTGGACAATGGGGCAAACCGATTACTTACTGGGGGCTGAGCGTTGGGCTCAATTGAAGTCGATTGGGTG
CGTTGAATCGTGTCGTCGTCAGCCAGGACACCCAGGCACACTTCAGCGGCGCTATTACCTTTTGAGCATTGAGAGTGATG
CACAACGGTTTGCCGATGCTGTGCGCTCTCATTGGGGGATTGAAAACCAGTTGCACTGGATTTTGGATGTGGGATTTCGT
GAAGATAAACTGCGTGCCTGTCAGGGATACAGTGCTCAAAACTTATCCGTCATTCGTCATATTGCTGCTAATTTGTTGCA
GCAAGAGTCAACGGCTAAATGTGGGGTTAAGGCAAAACGGCTCAAGGCAGGTTGGGATGATGACTACCTGGTCAAGATCC
TCAGCGCTGCTGCCAAGGGAATACCTGCTTCATGA

Upstream 100 bases:

>100_bases
AAGACAGAGATCCACAGGGCGACCGCACATAGAAGTTAACAAAGCATTCGAATTAGGAAGAGGTGGAGGATAATGCCTCA
AAAGCAACGCTCAGCAAGCC

Downstream 100 bases:

>100_bases
AGAACTATGTGCGGTCGCCCTGCAGAGATCCATCATGTATGGCTTAAAGCTCATGTTTGATCGCTAGGCGATGGGAGTTC
GGATTACCGCTTTATGTAGT

Product: IS4 family transposase

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MTSSPFASIIEHFSDLDDPRAAHRIEYSLEDIIFITLCAVLCGADNWVEVANYGCSKAQWLKQWIALPNGIPSHDTFEWV
FARLKPQQLQQCFLNWTQAIYHLSAGALIAIDGKTLRGAIATGEQRSLIHMVSAWASHNRLVLGQRTVEEKSNEITAIPE
LLKILELEGALVSIDAMGCQTAIAETIIEGQGDYVLALKGNQGDLYNDVVQLFDHACQTQFQGIEHDSYQTVEKGHGRIE
HRTYWTMGQTDYLLGAERWAQLKSIGCVESCRRQPGHPGTLQRRYYLLSIESDAQRFADAVRSHWGIENQLHWILDVGFR
EDKLRACQGYSAQNLSVIRHIAANLLQQESTAKCGVKAKRLKAGWDDDYLVKILSAAAKGIPAS

Sequences:

>Translated_384_residues
MTSSPFASIIEHFSDLDDPRAAHRIEYSLEDIIFITLCAVLCGADNWVEVANYGCSKAQWLKQWIALPNGIPSHDTFEWV
FARLKPQQLQQCFLNWTQAIYHLSAGALIAIDGKTLRGAIATGEQRSLIHMVSAWASHNRLVLGQRTVEEKSNEITAIPE
LLKILELEGALVSIDAMGCQTAIAETIIEGQGDYVLALKGNQGDLYNDVVQLFDHACQTQFQGIEHDSYQTVEKGHGRIE
HRTYWTMGQTDYLLGAERWAQLKSIGCVESCRRQPGHPGTLQRRYYLLSIESDAQRFADAVRSHWGIENQLHWILDVGFR
EDKLRACQGYSAQNLSVIRHIAANLLQQESTAKCGVKAKRLKAGWDDDYLVKILSAAAKGIPAS
>Mature_383_residues
TSSPFASIIEHFSDLDDPRAAHRIEYSLEDIIFITLCAVLCGADNWVEVANYGCSKAQWLKQWIALPNGIPSHDTFEWVF
ARLKPQQLQQCFLNWTQAIYHLSAGALIAIDGKTLRGAIATGEQRSLIHMVSAWASHNRLVLGQRTVEEKSNEITAIPEL
LKILELEGALVSIDAMGCQTAIAETIIEGQGDYVLALKGNQGDLYNDVVQLFDHACQTQFQGIEHDSYQTVEKGHGRIEH
RTYWTMGQTDYLLGAERWAQLKSIGCVESCRRQPGHPGTLQRRYYLLSIESDAQRFADAVRSHWGIENQLHWILDVGFRE
DKLRACQGYSAQNLSVIRHIAANLLQQESTAKCGVKAKRLKAGWDDDYLVKILSAAAKGIPAS

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=378, Percent_Identity=38.8888888888889, Blast_Score=276, Evalue=1e-75,
Organism=Escherichia coli, GI1787733, Length=377, Percent_Identity=38.4615384615385, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1786924, Length=249, Percent_Identity=38.5542168674699, Blast_Score=189, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 42964; Mature: 42833

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSPFASIIEHFSDLDDPRAAHRIEYSLEDIIFITLCAVLCGADNWVEVANYGCSKAQW
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHH
LKQWIALPNGIPSHDTFEWVFARLKPQQLQQCFLNWTQAIYHLSAGALIAIDGKTLRGAI
HHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
ATGEQRSLIHMVSAWASHNRLVLGQRTVEEKSNEITAIPELLKILELEGALVSIDAMGCQ
CCCCHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
TAIAETIIEGQGDYVLALKGNQGDLYNDVVQLFDHACQTQFQGIEHDSYQTVEKGHGRIE
HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEE
HRTYWTMGQTDYLLGAERWAQLKSIGCVESCRRQPGHPGTLQRRYYLLSIESDAQRFADA
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHHHHHHH
VRSHWGIENQLHWILDVGFREDKLRACQGYSAQNLSVIRHIAANLLQQESTAKCGVKAKR
HHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LKAGWDDDYLVKILSAAAKGIPAS
HCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSSPFASIIEHFSDLDDPRAAHRIEYSLEDIIFITLCAVLCGADNWVEVANYGCSKAQW
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHH
LKQWIALPNGIPSHDTFEWVFARLKPQQLQQCFLNWTQAIYHLSAGALIAIDGKTLRGAI
HHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH
ATGEQRSLIHMVSAWASHNRLVLGQRTVEEKSNEITAIPELLKILELEGALVSIDAMGCQ
CCCCHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
TAIAETIIEGQGDYVLALKGNQGDLYNDVVQLFDHACQTQFQGIEHDSYQTVEKGHGRIE
HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEE
HRTYWTMGQTDYLLGAERWAQLKSIGCVESCRRQPGHPGTLQRRYYLLSIESDAQRFADA
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHHHHHHH
VRSHWGIENQLHWILDVGFREDKLRACQGYSAQNLSVIRHIAANLLQQESTAKCGVKAKR
HHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LKAGWDDDYLVKILSAAAKGIPAS
HCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]