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The map label for this gene is dedA [C]

Identifier: 158338046

GI number: 158338046

Start: 4973279

End: 4973920

Strand: Reverse

Name: dedA [C]

Synonym: AM1_4933

Alternate gene names: 158338046

Gene position: 4973920-4973279 (Counterclockwise)

Preceding gene: 158338047

Following gene: 158338045

Centisome position: 76.48

GC content: 51.4

Gene sequence:

>642_bases
ATGGACTGGATTTCGTTAGACACTTTGCAAACATTAGCCCACCAATACGGCTATTGGGTTGTCTGCTTCGGCATATTATT
TGAAAACTTGGGATTACCCATACCAGGGGAAGCAATTGTCCTAGTGGGCGGCTTCCTGGCGGGTGAAGGTGACCTGAATT
ATTTTGGTGTATTGGGTAGTGCGATCGCAGGTTCAACCATCGGCGGCACCTGTGGCTATTGGGTCGGACATTTTGGCGGT
TGGTCTTTGTTATCGAGAGCGGGTCGCCTCGTCAATATGTCTGAAGAGCGCCTCCTAGACATTAAAGACGGGTTCAGCAC
CAATGCTGCTCGAACCGTCTTAATCGGACGATTTGTGGCGCTGCTGAGGATTTTTGCCAGTCCTCTCGCGGGTATTGCCG
AGATGCCCTTTCCCCGCTTTGTGTTTTTTAATACCTTGGGGGCCTGCTTGTGGGCTTTGGTGATGGTAACCCTGGCTTAC
TTTGCCGGTGAAATCATTCCCCTATCCCGCTTGGTTAGCAGCGTGTCTCAGTTTGGACTATTTGTATTACTGGCAATTGC
GGCTTGGCTACTCTGGCCTCGTCTCCACAACCTGATTCGCCGCACAGCCTTACAAGAAGCAAGTGAGTCTGACGCGCCCT
AG

Upstream 100 bases:

>100_bases
AACGTGGCTTTAAGGCTTGCACGGACTTGGATTGACAAAGTTAGAGTCCACAAGCCAAGATTGAGAAACGTAAAATTGTT
TACAGTTTGTATAAAGGTCT

Downstream 100 bases:

>100_bases
TACACCTACCGAACTAGTCCCCCTAAACGGTTCATCATCCCCGTGGAACAGACCCCTTTTACGCCGCAAGAACGGGTTGA
GTCGCTCAAAGCCGGGGGAT

Product: DedA family membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MDWISLDTLQTLAHQYGYWVVCFGILFENLGLPIPGEAIVLVGGFLAGEGDLNYFGVLGSAIAGSTIGGTCGYWVGHFGG
WSLLSRAGRLVNMSEERLLDIKDGFSTNAARTVLIGRFVALLRIFASPLAGIAEMPFPRFVFFNTLGACLWALVMVTLAY
FAGEIIPLSRLVSSVSQFGLFVLLAIAAWLLWPRLHNLIRRTALQEASESDAP

Sequences:

>Translated_213_residues
MDWISLDTLQTLAHQYGYWVVCFGILFENLGLPIPGEAIVLVGGFLAGEGDLNYFGVLGSAIAGSTIGGTCGYWVGHFGG
WSLLSRAGRLVNMSEERLLDIKDGFSTNAARTVLIGRFVALLRIFASPLAGIAEMPFPRFVFFNTLGACLWALVMVTLAY
FAGEIIPLSRLVSSVSQFGLFVLLAIAAWLLWPRLHNLIRRTALQEASESDAP
>Mature_213_residues
MDWISLDTLQTLAHQYGYWVVCFGILFENLGLPIPGEAIVLVGGFLAGEGDLNYFGVLGSAIAGSTIGGTCGYWVGHFGG
WSLLSRAGRLVNMSEERLLDIKDGFSTNAARTVLIGRFVALLRIFASPLAGIAEMPFPRFVFFNTLGACLWALVMVTLAY
FAGEIIPLSRLVSSVSQFGLFVLLAIAAWLLWPRLHNLIRRTALQEASESDAP

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=166, Percent_Identity=30.7228915662651, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082056, Length=158, Percent_Identity=30.379746835443, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23131; Mature: 23131

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWISLDTLQTLAHQYGYWVVCFGILFENLGLPIPGEAIVLVGGFLAGEGDLNYFGVLGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCCHHHHHHHH
AIAGSTIGGTCGYWVGHFGGWSLLSRAGRLVNMSEERLLDIKDGFSTNAARTVLIGRFVA
HHHCCCCCCHHHHHHHHCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
LLRIFASPLAGIAEMPFPRFVFFNTLGACLWALVMVTLAYFAGEIIPLSRLVSSVSQFGL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FVLLAIAAWLLWPRLHNLIRRTALQEASESDAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDWISLDTLQTLAHQYGYWVVCFGILFENLGLPIPGEAIVLVGGFLAGEGDLNYFGVLGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCCHHHHHHHH
AIAGSTIGGTCGYWVGHFGGWSLLSRAGRLVNMSEERLLDIKDGFSTNAARTVLIGRFVA
HHHCCCCCCHHHHHHHHCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
LLRIFASPLAGIAEMPFPRFVFFNTLGACLWALVMVTLAYFAGEIIPLSRLVSSVSQFGL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FVLLAIAAWLLWPRLHNLIRRTALQEASESDAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]