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The map label for this gene is yqxC [H]

Identifier: 158338042

GI number: 158338042

Start: 4971022

End: 4971840

Strand: Direct

Name: yqxC [H]

Synonym: AM1_4929

Alternate gene names: 158338042

Gene position: 4971022-4971840 (Clockwise)

Preceding gene: 158338041

Following gene: 158338043

Centisome position: 76.43

GC content: 51.28

Gene sequence:

>819_bases
TTGGCTAAACAGCGTCTGGACACCTTACTGGTTTCATTAGAGTTATGCACCTCTCGGCAGCAAGCCCAAAGGGTCATACG
GGCTGGGGAAGTAAAGGTCAATGACCAAATTATTGATAAGCCGGGGACCGAAGTTCAATTAACAGCAGAGATTCAAGTCA
AACAAAAATCTCCCTTTGTTTCTCGTGGTGGTCATAAGCTAGAAAAGGCTTTGGCTGAGTTTCCCATTCAGATACAGGAT
CGGATTTGTCTGGATGGCGGCATCTCCACTGGGGGGTTTACGGACTGTCTGCTGCAGGCCGGAGCCCAACAGGTCTATGG
CATTGATGTGGGCTACGGGCAGGTGGCCTGGAAGCTCCGCAATGATCCTCGGGTCATCCTCAAGGAACGCACCAATCTCC
GCCATCTTCAGCCTGCTGATTTATTTACCGAAGATGCGACTATTCCTGATTTAGGCGTGATTGATGTCTCGTTTATTTCT
CTAACGAAAGTTTTGCCTGCCCTCTGGCAGCTCTTACAACCGCCACGGGAAATGGTGTTGCTCGTGAAACCCCAATTTGA
AGTGGGAAAGGACCGAGTGGGGAAGCATGGCGTGGTACGAGATTCTCACGCGCATCGAGATGCGATCGCACAGGTCTACC
AAGCAGCATCAGCGCTGGGCTGGCACTATGCAGGCGTTACCTGGTCCCCCTTACCTGGCCCGAAGGGCAACATCGAGTTC
CTGTTATGGCTACAGCAAGAGGGCAGTGGTCCTTCTCCACAAACATTTTTAGAGATTGCCGTGGATGCTCAAAAAACGCT
TTCCCAACAGCCAAAGTGA

Upstream 100 bases:

>100_bases
GCCCCCTGACATAGAAACGACCCTTAATCCATCGTTTTGATCGGCAGGGGTAGGCAGACTCTTAGAATTGGGAAAGTAGT
ATTTTCGTATCCTCTCTGCC

Downstream 100 bases:

>100_bases
TGCTGCTTCAATGGGTGTGGTACGAATGACAATTGTCTCGCTATTGCATCGGTGAGATGGTACTAATCGTTTTCCATCCA
GAATCTTTGAGTCTGAGATA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MAKQRLDTLLVSLELCTSRQQAQRVIRAGEVKVNDQIIDKPGTEVQLTAEIQVKQKSPFVSRGGHKLEKALAEFPIQIQD
RICLDGGISTGGFTDCLLQAGAQQVYGIDVGYGQVAWKLRNDPRVILKERTNLRHLQPADLFTEDATIPDLGVIDVSFIS
LTKVLPALWQLLQPPREMVLLVKPQFEVGKDRVGKHGVVRDSHAHRDAIAQVYQAASALGWHYAGVTWSPLPGPKGNIEF
LLWLQQEGSGPSPQTFLEIAVDAQKTLSQQPK

Sequences:

>Translated_272_residues
MAKQRLDTLLVSLELCTSRQQAQRVIRAGEVKVNDQIIDKPGTEVQLTAEIQVKQKSPFVSRGGHKLEKALAEFPIQIQD
RICLDGGISTGGFTDCLLQAGAQQVYGIDVGYGQVAWKLRNDPRVILKERTNLRHLQPADLFTEDATIPDLGVIDVSFIS
LTKVLPALWQLLQPPREMVLLVKPQFEVGKDRVGKHGVVRDSHAHRDAIAQVYQAASALGWHYAGVTWSPLPGPKGNIEF
LLWLQQEGSGPSPQTFLEIAVDAQKTLSQQPK
>Mature_271_residues
AKQRLDTLLVSLELCTSRQQAQRVIRAGEVKVNDQIIDKPGTEVQLTAEIQVKQKSPFVSRGGHKLEKALAEFPIQIQDR
ICLDGGISTGGFTDCLLQAGAQQVYGIDVGYGQVAWKLRNDPRVILKERTNLRHLQPADLFTEDATIPDLGVIDVSFISL
TKVLPALWQLLQPPREMVLLVKPQFEVGKDRVGKHGVVRDSHAHRDAIAQVYQAASALGWHYAGVTWSPLPGPKGNIEFL
LWLQQEGSGPSPQTFLEIAVDAQKTLSQQPK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30066; Mature: 29935

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQRLDTLLVSLELCTSRQQAQRVIRAGEVKVNDQIIDKPGTEVQLTAEIQVKQKSPFV
CCHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEECCEEECCCCCEEEEEEEEEEECCCCCH
SRGGHKLEKALAEFPIQIQDRICLDGGISTGGFTDCLLQAGAQQVYGIDVGYGQVAWKLR
HCCCHHHHHHHHHCCCEEECEEEECCCCCCCCHHHHHHHHCCHHEEEEECCCCEEEEEEC
NDPRVILKERTNLRHLQPADLFTEDATIPDLGVIDVSFISLTKVLPALWQLLQPPREMVL
CCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
LVKPQFEVGKDRVGKHGVVRDSHAHRDAIAQVYQAASALGWHYAGVTWSPLPGPKGNIEF
EECCCHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEECCEEECCCCCCCCCEEE
LLWLQQEGSGPSPQTFLEIAVDAQKTLSQQPK
EEEEECCCCCCCCHHHHEEHHHHHHHHCCCCC
>Mature Secondary Structure 
AKQRLDTLLVSLELCTSRQQAQRVIRAGEVKVNDQIIDKPGTEVQLTAEIQVKQKSPFV
CHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEECCEEECCCCCEEEEEEEEEEECCCCCH
SRGGHKLEKALAEFPIQIQDRICLDGGISTGGFTDCLLQAGAQQVYGIDVGYGQVAWKLR
HCCCHHHHHHHHHCCCEEECEEEECCCCCCCCHHHHHHHHCCHHEEEEECCCCEEEEEEC
NDPRVILKERTNLRHLQPADLFTEDATIPDLGVIDVSFISLTKVLPALWQLLQPPREMVL
CCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
LVKPQFEVGKDRVGKHGVVRDSHAHRDAIAQVYQAASALGWHYAGVTWSPLPGPKGNIEF
EECCCHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEECCEEECCCCCCCCCEEE
LLWLQQEGSGPSPQTFLEIAVDAQKTLSQQPK
EEEEECCCCCCCCHHHHEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]