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The map label for this gene is yciR [C]

Identifier: 158337886

GI number: 158337886

Start: 4812926

End: 4814503

Strand: Reverse

Name: yciR [C]

Synonym: AM1_4772

Alternate gene names: 158337886

Gene position: 4814503-4812926 (Counterclockwise)

Preceding gene: 158337888

Following gene: 158337885

Centisome position: 74.03

GC content: 48.1

Gene sequence:

>1578_bases
ATGCTGATTCACTACCTCCTAGCGCTTCTACCTGCGATCGCAGCTTTTGCTACAGGCAGTATTGCTATCTATGTATGGCA
ACGGCGGTCCGTTACAGGGGCAAAATCCTTTTTTAGGTGTATTCTTTGCCTCTTTATTTGGTGCTTTTTCGCGGTCTTAG
AATATCTCAGCACTGAAGCCACTCCCCGCATCGTTTTTGGCAAACTGCAATACCTCGGCATTCCGTTTTTCGCCGTCTTT
TGGCTTGTCTTTACCCTGCAATACACCCATAACGATTCTCGTCTGAACACCCAGAGAACGAGAGGGATGATGGTGTTGCC
CCTACTGAGCATGATCTTTGCCTTTACAGATCCTTGGCATGGTCTGATTTGGGCATCTGTGGAATTGGGGCATACCCCTG
CGCCTCAATTGATGATTGATCATGGCTGGTGGTTTAGCTATGTGATGATGCCCTACAACTACTTGCTGCTGCTAGGGGGC
GTCGGCGTACTCCTCAACGCTTATTTCGCCAGCTCCCAAATCTATCGACAACAGATTTTGGTATTGCTGTCTGCGTCGAT
CATTCCCTTCTTTTCTAGCCTGTTGTATCTGTTAGCAAGGGTTCATTTCTACGGGTTAGACCTGACCCCGATTAGCTTTG
CGGTCAGCGGTTTGATCATGGTAGTGGGACTGTTTCGCGGCAAACTATTTGAAGTCTCCCCCATTTCCTACCGCACCGTA
TTTCTCAACACAGAAGATGCGGTGATATTTCTGGATACTCAAAATCATATTGTCGATCTCAATCCCAGTGCTTATCGCGA
AAGCCTGTTTGACAATATTTTGGGGCAACCGTTTCACGTCAGCTTTCCCGCCTATCAGCATTTGCTGACAACGCCCCTGA
CCCAAGAAATCACTGAAACGGTCAAGCTATTTCAATTTTCCCAAACCCTCCTTAAAGAAGTCAAAATCCGGACGTTGCAC
AGCCCAGGTCATCGTCTAGTAGGATCTTTGGTCATTATTCGCGATGTTACCGTTGAACGCCAAAAACAAGCGCAGCTCAA
GCATTTTGCCTACTTTGATAGTCTGACGGGGCTGTGTAATCGTCGCCAATTGGAAATCTCAGGCCAATTGTCCCTGAGTA
GCGCGGGCAAAGGACTGTGGCCAGTGGCCTTGTTATACGTAGATTTAAATGACTTTAAGCCGATTAATGATACCTATGGC
CATCAGATCGGAGATGCAGTACTCATTTATGTGGCGAAGTGCTTAAAAACCTGCGTGCGTCAGGGGGACATTGTCGCCCG
TATTGGCGGGGATGAATTTGTAGCCTTGTTGTTTAAGGTGAATCAAAATGCAGCCCATGCCACCCGGGAACGGCTCTTAC
TCCGGTTGCGACAGCCCCTAAAACTTGAGAATATCACCCTCAAAATAACCGCTAGTATTGGTGTTGCCAGCCATCCCCAG
GACGGCTGTACCCTATCAGAACTGATGCATTGTGCTGATCAATCTATGTACCAGGACAAGCAAACCTATCGCGATCGCCG
AGACCATCCCCGGTCCCTAACCGATCAAACCCAGGGAACCATGAAATCGCCAAAATAA

Upstream 100 bases:

>100_bases
GTTTTTCCAGTAAAGCAAACCACCCACGCAAGAGAATTCACTTCCGATCACCAGTGAGGGATGTGGAATAGGCTACGATG
GTGCTAATTCAAGACCGACC

Downstream 100 bases:

>100_bases
TGGTCACGAATCATCCGGACTATTACTTTGCCTACGGCTCTAATTTGTATCAGTCCCGCTTACTAGCGCGCGTCCCGTCC
GCTCGCTTCATCACCCTGGG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MLIHYLLALLPAIAAFATGSIAIYVWQRRSVTGAKSFFRCILCLFIWCFFAVLEYLSTEATPRIVFGKLQYLGIPFFAVF
WLVFTLQYTHNDSRLNTQRTRGMMVLPLLSMIFAFTDPWHGLIWASVELGHTPAPQLMIDHGWWFSYVMMPYNYLLLLGG
VGVLLNAYFASSQIYRQQILVLLSASIIPFFSSLLYLLARVHFYGLDLTPISFAVSGLIMVVGLFRGKLFEVSPISYRTV
FLNTEDAVIFLDTQNHIVDLNPSAYRESLFDNILGQPFHVSFPAYQHLLTTPLTQEITETVKLFQFSQTLLKEVKIRTLH
SPGHRLVGSLVIIRDVTVERQKQAQLKHFAYFDSLTGLCNRRQLEISGQLSLSSAGKGLWPVALLYVDLNDFKPINDTYG
HQIGDAVLIYVAKCLKTCVRQGDIVARIGGDEFVALLFKVNQNAAHATRERLLLRLRQPLKLENITLKITASIGVASHPQ
DGCTLSELMHCADQSMYQDKQTYRDRRDHPRSLTDQTQGTMKSPK

Sequences:

>Translated_525_residues
MLIHYLLALLPAIAAFATGSIAIYVWQRRSVTGAKSFFRCILCLFIWCFFAVLEYLSTEATPRIVFGKLQYLGIPFFAVF
WLVFTLQYTHNDSRLNTQRTRGMMVLPLLSMIFAFTDPWHGLIWASVELGHTPAPQLMIDHGWWFSYVMMPYNYLLLLGG
VGVLLNAYFASSQIYRQQILVLLSASIIPFFSSLLYLLARVHFYGLDLTPISFAVSGLIMVVGLFRGKLFEVSPISYRTV
FLNTEDAVIFLDTQNHIVDLNPSAYRESLFDNILGQPFHVSFPAYQHLLTTPLTQEITETVKLFQFSQTLLKEVKIRTLH
SPGHRLVGSLVIIRDVTVERQKQAQLKHFAYFDSLTGLCNRRQLEISGQLSLSSAGKGLWPVALLYVDLNDFKPINDTYG
HQIGDAVLIYVAKCLKTCVRQGDIVARIGGDEFVALLFKVNQNAAHATRERLLLRLRQPLKLENITLKITASIGVASHPQ
DGCTLSELMHCADQSMYQDKQTYRDRRDHPRSLTDQTQGTMKSPK
>Mature_525_residues
MLIHYLLALLPAIAAFATGSIAIYVWQRRSVTGAKSFFRCILCLFIWCFFAVLEYLSTEATPRIVFGKLQYLGIPFFAVF
WLVFTLQYTHNDSRLNTQRTRGMMVLPLLSMIFAFTDPWHGLIWASVELGHTPAPQLMIDHGWWFSYVMMPYNYLLLLGG
VGVLLNAYFASSQIYRQQILVLLSASIIPFFSSLLYLLARVHFYGLDLTPISFAVSGLIMVVGLFRGKLFEVSPISYRTV
FLNTEDAVIFLDTQNHIVDLNPSAYRESLFDNILGQPFHVSFPAYQHLLTTPLTQEITETVKLFQFSQTLLKEVKIRTLH
SPGHRLVGSLVIIRDVTVERQKQAQLKHFAYFDSLTGLCNRRQLEISGQLSLSSAGKGLWPVALLYVDLNDFKPINDTYG
HQIGDAVLIYVAKCLKTCVRQGDIVARIGGDEFVALLFKVNQNAAHATRERLLLRLRQPLKLENITLKITASIGVASHPQ
DGCTLSELMHCADQSMYQDKQTYRDRRDHPRSLTDQTQGTMKSPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=35.2941176470588, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=35.5555555555556, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788381, Length=274, Percent_Identity=28.1021897810219, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=34.2391304347826, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=31.9018404907975, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=34.5454545454545, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=34.8571428571429, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=29.2397660818713, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=35.2941176470588, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=33.1428571428571, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=35.4037267080745, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=30.0578034682081, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=31.3253012048193, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59590; Mature: 59590

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIHYLLALLPAIAAFATGSIAIYVWQRRSVTGAKSFFRCILCLFIWCFFAVLEYLSTEA
CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TPRIVFGKLQYLGIPFFAVFWLVFTLQYTHNDSRLNTQRTRGMMVLPLLSMIFAFTDPWH
CCCEEEEHHHHHCCHHHHHHHHHHHHHEECCCCCCCHHHHCCEEHHHHHHHHHHHCCCCC
GLIWASVELGHTPAPQLMIDHGWWFSYVMMPYNYLLLLGGVGVLLNAYFASSQIYRQQIL
CEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLSASIIPFFSSLLYLLARVHFYGLDLTPISFAVSGLIMVVGLFRGKLFEVSPISYRTV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
FLNTEDAVIFLDTQNHIVDLNPSAYRESLFDNILGQPFHVSFPAYQHLLTTPLTQEITET
EEECCCEEEEEECCCCEEECCHHHHHHHHHHHHCCCCEEECCHHHHHHHCCCHHHHHHHH
VKLFQFSQTLLKEVKIRTLHSPGHRLVGSLVIIRDVTVERQKQAQLKHFAYFDSLTGLCN
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHCC
RRQLEISGQLSLSSAGKGLWPVALLYVDLNDFKPINDTYGHQIGDAVLIYVAKCLKTCVR
CCEEEEECCEEECCCCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHC
QGDIVARIGGDEFVALLFKVNQNAAHATRERLLLRLRQPLKLENITLKITASIGVASHPQ
CCCEEEEECCCHHEEEEEHCCCCHHHHHHHHHHHHHCCCCEECCEEEEEEEECCCCCCCC
DGCTLSELMHCADQSMYQDKQTYRDRRDHPRSLTDQTQGTMKSPK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MLIHYLLALLPAIAAFATGSIAIYVWQRRSVTGAKSFFRCILCLFIWCFFAVLEYLSTEA
CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TPRIVFGKLQYLGIPFFAVFWLVFTLQYTHNDSRLNTQRTRGMMVLPLLSMIFAFTDPWH
CCCEEEEHHHHHCCHHHHHHHHHHHHHEECCCCCCCHHHHCCEEHHHHHHHHHHHCCCCC
GLIWASVELGHTPAPQLMIDHGWWFSYVMMPYNYLLLLGGVGVLLNAYFASSQIYRQQIL
CEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLSASIIPFFSSLLYLLARVHFYGLDLTPISFAVSGLIMVVGLFRGKLFEVSPISYRTV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
FLNTEDAVIFLDTQNHIVDLNPSAYRESLFDNILGQPFHVSFPAYQHLLTTPLTQEITET
EEECCCEEEEEECCCCEEECCHHHHHHHHHHHHCCCCEEECCHHHHHHHCCCHHHHHHHH
VKLFQFSQTLLKEVKIRTLHSPGHRLVGSLVIIRDVTVERQKQAQLKHFAYFDSLTGLCN
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHCC
RRQLEISGQLSLSSAGKGLWPVALLYVDLNDFKPINDTYGHQIGDAVLIYVAKCLKTCVR
CCEEEEECCEEECCCCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHC
QGDIVARIGGDEFVALLFKVNQNAAHATRERLLLRLRQPLKLENITLKITASIGVASHPQ
CCCEEEEECCCHHEEEEEHCCCCHHHHHHHHHHHHHCCCCEECCEEEEEEEECCCCCCCC
DGCTLSELMHCADQSMYQDKQTYRDRRDHPRSLTDQTQGTMKSPK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]