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The map label for this gene is petD

Identifier: 158337781

GI number: 158337781

Start: 4699717

End: 4700202

Strand: Reverse

Name: petD

Synonym: AM1_4665

Alternate gene names: 158337781

Gene position: 4700202-4699717 (Counterclockwise)

Preceding gene: 158337782

Following gene: 158337780

Centisome position: 72.27

GC content: 45.88

Gene sequence:

>486_bases
ATGGCAAAAATACTTAAACAACCTGATCTAAGCGATCCACAGTTAAAGGAAAAGCTTAAAAAGGGCATGGGCCATAACTA
TTATGGTGAGCCCGCCTGGCCTAATGACCTGCTCTATATTTTCCCTGTGGTGATTATGGGCACGATCTCCCTGGTCATTG
GCTTAGCGGTCTTAGACCCAGCCATGATTGGTGAACCTTCTAATCCCTTCGCCACCCCCTTAGAAATTCTGCCTGAATGG
TATCTATATCCTGTCTTCCAGATTCTGCGGACAGTTCCCAGCAAGCTGTTGGGCGTCCTCATTCAGACCACAATTCCTTT
GGGACTCATGCTTATTCCTTTCATTGAAAACGTGAATAAGTTCCAGAACCCATTCCGTCGACCCATTGCGACTAGCGTCT
TCCTATTTAGCGTAGTCTTCACCCTATGGTTAGGAATTGGTGCAACACTTCCCATTGACAAGTCTTTGACCTTGGGATTG
TTCTAA

Upstream 100 bases:

>100_bases
AATCGGGTTTTCTGTTTTCGGAGTCTCAGACTTTTGACGTAAGTCTTTGTGAGAACCCTCACCTGCTGACCCAAAAATAG
AACGGAGAACACTCGCAACC

Downstream 100 bases:

>100_bases
GTTCTGAACCCTCAGCTTTATAAGCAATAGGGGTATTAATTTTCTGAGCATCCATTTGCTAATGAGCAATGGGTGCTCTT
TTTGTTCTAGGTCTTCTTAC

Product: cytochrome b6-f complex subunit IV

Products: NA

Alternate protein names: 17 kDa polypeptide

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAKILKQPDLSDPQLKEKLKKGMGHNYYGEPAWPNDLLYIFPVVIMGTISLVIGLAVLDPAMIGEPSNPFATPLEILPEW
YLYPVFQILRTVPSKLLGVLIQTTIPLGLMLIPFIENVNKFQNPFRRPIATSVFLFSVVFTLWLGIGATLPIDKSLTLGL
F

Sequences:

>Translated_161_residues
MAKILKQPDLSDPQLKEKLKKGMGHNYYGEPAWPNDLLYIFPVVIMGTISLVIGLAVLDPAMIGEPSNPFATPLEILPEW
YLYPVFQILRTVPSKLLGVLIQTTIPLGLMLIPFIENVNKFQNPFRRPIATSVFLFSVVFTLWLGIGATLPIDKSLTLGL
F
>Mature_160_residues
AKILKQPDLSDPQLKEKLKKGMGHNYYGEPAWPNDLLYIFPVVIMGTISLVIGLAVLDPAMIGEPSNPFATPLEILPEWY
LYPVFQILRTVPSKLLGVLIQTTIPLGLMLIPFIENVNKFQNPFRRPIATSVFLFSVVFTLWLGIGATLPIDKSLTLGLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PETD_ACAM1 (B0C0E7)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001518957.1
- ProteinModelPortal:   B0C0E7
- SMR:   B0C0E7
- GeneID:   5683467
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_4665
- HOGENOM:   HBG286085
- OMA:   PFIESVN
- ProtClustDB:   PRK13476
- BioCyc:   AMAR329726:AM1_4665-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01344
- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870
- Gene3D:   G3DSA:1.20.810.10
- PANTHER:   PTHR19271
- PIRSF:   PIRSF000033
- TIGRFAMs:   TIGR01156

Pfam domain/function: PF00032 Cytochrom_B_C; SSF81648 Cytochrome_b/b6_C

EC number: NA

Molecular weight: Translated: 17981; Mature: 17850

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x136b9f78)-; HASH(0x13abb118)-; HASH(0x13ef1284)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKILKQPDLSDPQLKEKLKKGMGHNYYGEPAWPNDLLYIFPVVIMGTISLVIGLAVLDP
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AMIGEPSNPFATPLEILPEWYLYPVFQILRTVPSKLLGVLIQTTIPLGLMLIPFIENVNK
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQNPFRRPIATSVFLFSVVFTLWLGIGATLPIDKSLTLGLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
AKILKQPDLSDPQLKEKLKKGMGHNYYGEPAWPNDLLYIFPVVIMGTISLVIGLAVLDP
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AMIGEPSNPFATPLEILPEWYLYPVFQILRTVPSKLLGVLIQTTIPLGLMLIPFIENVNK
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQNPFRRPIATSVFLFSVVFTLWLGIGATLPIDKSLTLGLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA