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The map label for this gene is dppB [H]

Identifier: 158337766

GI number: 158337766

Start: 4683680

End: 4684705

Strand: Reverse

Name: dppB [H]

Synonym: AM1_4650

Alternate gene names: 158337766

Gene position: 4684705-4683680 (Counterclockwise)

Preceding gene: 158337767

Following gene: 158337765

Centisome position: 72.03

GC content: 41.81

Gene sequence:

>1026_bases
ATGTCTCGCTCTCGTGCACTTCGCTCCTATTTGGTCGCCCGATTATTGTTGGCACCTTTGATGATATGGACAGTGACTAC
TGCCGTATTCTTGCTCATGCGAGCAACACCTGGGGATCCTATTGATGCCATTCTAGGACCGAAAGCCCCAGCAGCTCAGA
AGTTAGCCATACGTAGTCAATTAGGATTAGATCAACCTCTTTGGCATCAATATACGAACTATATGAAGGATTTACTAAAC
TTCGATTTAGGAACTTCACTAAGTAGTCGTGGAGAGCCCGTATGGAATATTATTCAGCAGCATTTTCCAGCAACATTAGA
GCTTGCTCTTTGTAGTCTCACTGTTGCGTTTGTTTTGGGAGTTACTGTAGGGATTATTTCGGCATCTAAACCCGATACTA
GTTATGACTTTTGGGGAAGAATATTTGGAATTGGTACTTATGCCTTACCAATGTTTTGGGTAGGGATGTTATTTAAATTA
TTCTTCGCTGTTCAACTTGGATGGTTTCCTGATAGCACTCGTTTCTCAACTCGCCTAAGTGCACCGCAAGGCCCTACCAG
TCTTTATACAGTCGATAGCTTATTAGCAGGAGATTTTCAATCATTTGGCGTTGCGATTTATCATTTGGCCTTGCCCAGCC
TAACCCTTGGTATTTTCTTAAGCGGTATTTTTGAGCGTATTGTTCGAGTTAATCTCAAACAATCACTCACAGCAGACTAT
GTAGAGGCTGCACGGGCAAGAGGAATCCCTGAATGGCGAATTCTAGTATTTCATGCATTGAGAAATGCATTAATTCCGGT
CATCACTGTTTTGGGACTTACAATTTCTGCAATGATGGGTGGTTCTGTTCTAACGGAAGTTACTTTCTCTTGGCCAGGTT
TAGGGAATCGACTTTATGATGCAATTTCATTAAGAGATTATCCAACAGTGCAAGGAATTATCGTCTTTGTTTCGGTCATC
ACTGTAATGTCTAGCATCGTCATTGATATCGTCAATGCCTATGTTGATCCAAGGATTCGCTATTAG

Upstream 100 bases:

>100_bases
AGTATGCCTTTGCCCGACCTGATATCCAAGGCGTGCGGCTGGAACCAACTCAAGCGATGCCTTTTGCCTCTCTTAGCCGT
TCAGCGACCTAGGAGTCACT

Downstream 100 bases:

>100_bases
GGTTACGGTTGGTTTTCGGTAATCCCTCTGTTGGGGTTCCCCCTTGACTAAATAGAAGAACTAAACTTAAGACAAAGCAA
GGTTTGGGGCAGAGGATTGC

Product: dipeptide/oligopeptide/nickel ABC transporter permease DppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSRSRALRSYLVARLLLAPLMIWTVTTAVFLLMRATPGDPIDAILGPKAPAAQKLAIRSQLGLDQPLWHQYTNYMKDLLN
FDLGTSLSSRGEPVWNIIQQHFPATLELALCSLTVAFVLGVTVGIISASKPDTSYDFWGRIFGIGTYALPMFWVGMLFKL
FFAVQLGWFPDSTRFSTRLSAPQGPTSLYTVDSLLAGDFQSFGVAIYHLALPSLTLGIFLSGIFERIVRVNLKQSLTADY
VEAARARGIPEWRILVFHALRNALIPVITVLGLTISAMMGGSVLTEVTFSWPGLGNRLYDAISLRDYPTVQGIIVFVSVI
TVMSSIVIDIVNAYVDPRIRY

Sequences:

>Translated_341_residues
MSRSRALRSYLVARLLLAPLMIWTVTTAVFLLMRATPGDPIDAILGPKAPAAQKLAIRSQLGLDQPLWHQYTNYMKDLLN
FDLGTSLSSRGEPVWNIIQQHFPATLELALCSLTVAFVLGVTVGIISASKPDTSYDFWGRIFGIGTYALPMFWVGMLFKL
FFAVQLGWFPDSTRFSTRLSAPQGPTSLYTVDSLLAGDFQSFGVAIYHLALPSLTLGIFLSGIFERIVRVNLKQSLTADY
VEAARARGIPEWRILVFHALRNALIPVITVLGLTISAMMGGSVLTEVTFSWPGLGNRLYDAISLRDYPTVQGIIVFVSVI
TVMSSIVIDIVNAYVDPRIRY
>Mature_340_residues
SRSRALRSYLVARLLLAPLMIWTVTTAVFLLMRATPGDPIDAILGPKAPAAQKLAIRSQLGLDQPLWHQYTNYMKDLLNF
DLGTSLSSRGEPVWNIIQQHFPATLELALCSLTVAFVLGVTVGIISASKPDTSYDFWGRIFGIGTYALPMFWVGMLFKLF
FAVQLGWFPDSTRFSTRLSAPQGPTSLYTVDSLLAGDFQSFGVAIYHLALPSLTLGIFLSGIFERIVRVNLKQSLTADYV
EAARARGIPEWRILVFHALRNALIPVITVLGLTISAMMGGSVLTEVTFSWPGLGNRLYDAISLRDYPTVQGIIVFVSVIT
VMSSIVIDIVNAYVDPRIRY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=320, Percent_Identity=35, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=35.1351351351351, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787761, Length=320, Percent_Identity=40, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789888, Length=334, Percent_Identity=31.7365269461078, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=31.3868613138686, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=26.9461077844311, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1788504, Length=372, Percent_Identity=29.0322580645161, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37686; Mature: 37555

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRSRALRSYLVARLLLAPLMIWTVTTAVFLLMRATPGDPIDAILGPKAPAAQKLAIRSQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHH
LGLDQPLWHQYTNYMKDLLNFDLGTSLSSRGEPVWNIIQQHFPATLELALCSLTVAFVLG
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VTVGIISASKPDTSYDFWGRIFGIGTYALPMFWVGMLFKLFFAVQLGWFPDSTRFSTRLS
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
APQGPTSLYTVDSLLAGDFQSFGVAIYHLALPSLTLGIFLSGIFERIVRVNLKQSLTADY
CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEAARARGIPEWRILVFHALRNALIPVITVLGLTISAMMGGSVLTEVTFSWPGLGNRLYD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHH
AISLRDYPTVQGIIVFVSVITVMSSIVIDIVNAYVDPRIRY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]