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The map label for this gene is fni [H]

Identifier: 158337495

GI number: 158337495

Start: 4404105

End: 4405154

Strand: Reverse

Name: fni [H]

Synonym: AM1_4374

Alternate gene names: 158337495

Gene position: 4405154-4404105 (Counterclockwise)

Preceding gene: 158337496

Following gene: 158337492

Centisome position: 67.73

GC content: 49.62

Gene sequence:

>1050_bases
GTGACTTCTACTTCCCCCAACACTGATGAGGCCATCAAAACCCGTAAGGCCGACCATCTCCGCATCTGTTTAGATGACAA
AGTCCAGTGTAAATCAATCACCACTGGTTTTGAACAGTACCGTTTCCAGCACTGCTGTTTACCAGAGTTAGCGCTGGAAG
ATATCCAGTTATCGACGACTTTTTTAGGAAAGTCTCTGGGGGCACCGCTGTTGATCTCATCCATGACGGGGGGAACTGAA
CTAGCCAAAACCATTAATCAGCGGTTAGCAATCGTTGCTCAAGAGTTCAAGATTGCCATGGGCGTGGGGTCACAGCGAGT
GGCCGTGGAACATCCTCAGGTTGCTGATACCTTTGCTGTGCGATCTCATGCACCAGACATTCCCCTCTTTGCCAACTTAG
GAGCAGTCCAGCTTAACTATGGCTATAACCTAGACGCCTGCCGCCGCAGCATTGATTTACTAGAAGCCGATGCCTTAATT
TTGCACCTCAATCCCCTACAAGAATGCATTCAAAGTCACGGCGATACCAACTTCCGTAATCTGTTTACGCAGATTGGCAA
ACTCTGCCAACAGCTCCCTGTTCCTGTCATTGTCAAAGAAGTTGGCAATGGTATTTCTGCTCCTTTAGCCATACGCTTAG
TAGACGTTGGTGTCGCAGCCATTGATGTAGCCGGTGCAGGCGGCACGTCCTGGGCCAAAGTCGAAGGGGAACGGGCGGAA
GATATCCGTCAGCGTCGACTCGGCCAAACCTTCTCAGATTGGGGTTTGCCCACTGCAGAATGTGTGGCGTCCATTTTTCA
AGCCAATTCTAAGATCCCATTAATTGCTTCTGGTGGCCTACGCAATGGCCTTGATGCTGCCAAAGCTCTGGCGCTAGGAG
CTGATGTAGCAGGAATGGCTTACCCATTCTTACAAGCCGCCCATGAATCAGAAGCCGCTCTACACACTCTTATGGAAATG
CTCATTGCTGAGTTAGAAACGGTACTCTTTTGCACCGGGAATGCAACGATAACAGACTTACAAGCCTCTCAATGCCTACT
TCAGACCTAA

Upstream 100 bases:

>100_bases
TCAGCCAAGTCAACAGAATTTTGCATAATTAAGAGAGCTTCCGGTCACAAAGCCAGCAATTGGTTCTGCCCGGTTGATGT
CTTATCTCTTTTCCATGCGA

Downstream 100 bases:

>100_bases
TCATGCCGGGCAAGCAAATAATCAACAGATAATGCCTCCCTTTGGATGTCTTTTTATATCCCAAACAAGGTCTGAATACG
ACGACGGATCCAGATAAAGG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MTSTSPNTDEAIKTRKADHLRICLDDKVQCKSITTGFEQYRFQHCCLPELALEDIQLSTTFLGKSLGAPLLISSMTGGTE
LAKTINQRLAIVAQEFKIAMGVGSQRVAVEHPQVADTFAVRSHAPDIPLFANLGAVQLNYGYNLDACRRSIDLLEADALI
LHLNPLQECIQSHGDTNFRNLFTQIGKLCQQLPVPVIVKEVGNGISAPLAIRLVDVGVAAIDVAGAGGTSWAKVEGERAE
DIRQRRLGQTFSDWGLPTAECVASIFQANSKIPLIASGGLRNGLDAAKALALGADVAGMAYPFLQAAHESEAALHTLMEM
LIAELETVLFCTGNATITDLQASQCLLQT

Sequences:

>Translated_349_residues
MTSTSPNTDEAIKTRKADHLRICLDDKVQCKSITTGFEQYRFQHCCLPELALEDIQLSTTFLGKSLGAPLLISSMTGGTE
LAKTINQRLAIVAQEFKIAMGVGSQRVAVEHPQVADTFAVRSHAPDIPLFANLGAVQLNYGYNLDACRRSIDLLEADALI
LHLNPLQECIQSHGDTNFRNLFTQIGKLCQQLPVPVIVKEVGNGISAPLAIRLVDVGVAAIDVAGAGGTSWAKVEGERAE
DIRQRRLGQTFSDWGLPTAECVASIFQANSKIPLIASGGLRNGLDAAKALALGADVAGMAYPFLQAAHESEAALHTLMEM
LIAELETVLFCTGNATITDLQASQCLLQT
>Mature_348_residues
TSTSPNTDEAIKTRKADHLRICLDDKVQCKSITTGFEQYRFQHCCLPELALEDIQLSTTFLGKSLGAPLLISSMTGGTEL
AKTINQRLAIVAQEFKIAMGVGSQRVAVEHPQVADTFAVRSHAPDIPLFANLGAVQLNYGYNLDACRRSIDLLEADALIL
HLNPLQECIQSHGDTNFRNLFTQIGKLCQQLPVPVIVKEVGNGISAPLAIRLVDVGVAAIDVAGAGGTSWAKVEGERAED
IRQRRLGQTFSDWGLPTAECVASIFQANSKIPLIASGGLRNGLDAAKALALGADVAGMAYPFLQAAHESEAALHTLMEML
IAELETVLFCTGNATITDLQASQCLLQT

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:
GO:0003824: Isopentenyl-diphosphate delta-isomerase
GO:0004452: Isopentenyl-diphosphate delta-isomerase
GO:0005737: Isopentenyl-diphosphate delta-isomerase
GO:0008152: Isopentenyl-diphosphate delta-isomerase
GO:0008299: Isopentenyl-diphosphate delta-isomerase
GO:0010181: Isopentenyl-diphosphate delta-isomerase
GO:0016491: Isopentenyl-diphosphate delta-isomerase
GO:0016853: Isopentenyl-diphosphate delta-isomerase
GO:0055114: Isopentenyl-diphosphate delta-isomerase

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 37424; Mature: 37293

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTSPNTDEAIKTRKADHLRICLDDKVQCKSITTGFEQYRFQHCCLPELALEDIQLSTT
CCCCCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FLGKSLGAPLLISSMTGGTELAKTINQRLAIVAQEFKIAMGVGSQRVAVEHPQVADTFAV
HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHH
RSHAPDIPLFANLGAVQLNYGYNLDACRRSIDLLEADALILHLNPLQECIQSHGDTNFRN
HCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHCEEEEEEHHHHHHHHHCCCCHHHH
LFTQIGKLCQQLPVPVIVKEVGNGISAPLAIRLVDVGVAAIDVAGAGGTSWAKVEGERAE
HHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEECCEEEEEECCCCCCCEEEECCHHHH
DIRQRRLGQTFSDWGLPTAECVASIFQANSKIPLIASGGLRNGLDAAKALALGADVAGMA
HHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHH
YPFLQAAHESEAALHTLMEMLIAELETVLFCTGNATITDLQASQCLLQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECHHHHHHHCC
>Mature Secondary Structure 
TSTSPNTDEAIKTRKADHLRICLDDKVQCKSITTGFEQYRFQHCCLPELALEDIQLSTT
CCCCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FLGKSLGAPLLISSMTGGTELAKTINQRLAIVAQEFKIAMGVGSQRVAVEHPQVADTFAV
HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHH
RSHAPDIPLFANLGAVQLNYGYNLDACRRSIDLLEADALILHLNPLQECIQSHGDTNFRN
HCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHCEEEEEEHHHHHHHHHCCCCHHHH
LFTQIGKLCQQLPVPVIVKEVGNGISAPLAIRLVDVGVAAIDVAGAGGTSWAKVEGERAE
HHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEECCEEEEEECCCCCCCEEEECCHHHH
DIRQRRLGQTFSDWGLPTAECVASIFQANSKIPLIASGGLRNGLDAAKALALGADVAGMA
HHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHH
YPFLQAAHESEAALHTLMEMLIAELETVLFCTGNATITDLQASQCLLQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA