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The map label for this gene is rimN [H]

Identifier: 158337414

GI number: 158337414

Start: 4312317

End: 4312901

Strand: Direct

Name: rimN [H]

Synonym: AM1_4293

Alternate gene names: 158337414

Gene position: 4312317-4312901 (Clockwise)

Preceding gene: 158337412

Following gene: 158337417

Centisome position: 66.31

GC content: 54.7

Gene sequence:

>585_bases
ATGACTCAACTTCCAATTGCTGCCTTTATTGCTGCGGCCCGTTCCGGTCGGCTGGTGAGCTTCCCCACGGATACGGTTCC
GGCTTTAGCAGCTCGTCCCGACCAAGCTTCGCAAATCTTTGCAGCTAAGCAACGACAGCCGGATAAGCCGCTGATTTTGA
TGGGGGCTTCTCCAGAGATGCTTTGGCCTTATGTACGTAAGGATGGGAAGGAGCTGAACCAGTGGCAACAGATGGCGGCT
GACTATTGGCCGGGGGCGTTGACCTTGGTGTTACCGGCTTGCGATCGCGTTCCTCCAGCCATGAATCCCCTCACGCCCGA
CAGTATTGGCATTCGGGTGCCCAATTCCCAGGTGGCGCAAATGATTTTGCAGCAAACCGGACCCTTGGCCACCACCAGTA
TCAATCGCTCTGGGCAACCCGCTTTAACCACTGTTGAAGCCATCAATCAACACTTCCCCGATGTGTTTACTCCTCTAGCT
AGCCTGTGGCCCGAACCTCAATCGACAGAACCTCTGCCTTCGACAGTTATCAAATGGGATGGGCAGGGTTGGGAAGTTTT
GCGTCAGGGGGTAATCCAGATTTAG

Upstream 100 bases:

>100_bases
TTATTGCTGAGGTGGGGGGTGAGAAGATATTCTAGCGGTCTAACTGTGCAGAAACAGACGACTAAACTTCCCCCAAATCC
CATTCTAATCTGCGTTTGGC

Downstream 100 bases:

>100_bases
GGCAAATGTATTTTGACTGGTTCAGGTCTCATTTGTAACACCCACATACAGCTTCCCCATCTATATACTTGGCCTTGTTG
AATTATCGTTAGCTGAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTQLPIAAFIAAARSGRLVSFPTDTVPALAARPDQASQIFAAKQRQPDKPLILMGASPEMLWPYVRKDGKELNQWQQMAA
DYWPGALTLVLPACDRVPPAMNPLTPDSIGIRVPNSQVAQMILQQTGPLATTSINRSGQPALTTVEAINQHFPDVFTPLA
SLWPEPQSTEPLPSTVIKWDGQGWEVLRQGVIQI

Sequences:

>Translated_194_residues
MTQLPIAAFIAAARSGRLVSFPTDTVPALAARPDQASQIFAAKQRQPDKPLILMGASPEMLWPYVRKDGKELNQWQQMAA
DYWPGALTLVLPACDRVPPAMNPLTPDSIGIRVPNSQVAQMILQQTGPLATTSINRSGQPALTTVEAINQHFPDVFTPLA
SLWPEPQSTEPLPSTVIKWDGQGWEVLRQGVIQI
>Mature_193_residues
TQLPIAAFIAAARSGRLVSFPTDTVPALAARPDQASQIFAAKQRQPDKPLILMGASPEMLWPYVRKDGKELNQWQQMAAD
YWPGALTLVLPACDRVPPAMNPLTPDSIGIRVPNSQVAQMILQQTGPLATTSINRSGQPALTTVEAINQHFPDVFTPLAS
LWPEPQSTEPLPSTVIKWDGQGWEVLRQGVIQI

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=159, Percent_Identity=33.9622641509434, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21184; Mature: 21052

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLPIAAFIAAARSGRLVSFPTDTVPALAARPDQASQIFAAKQRQPDKPLILMGASPEM
CCCCHHHHHHHHHCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCHH
LWPYVRKDGKELNQWQQMAADYWPGALTLVLPACDRVPPAMNPLTPDSIGIRVPNSQVAQ
HHHHHHHCHHHHHHHHHHHHHHCCCCEEHEEHHHCCCCCCCCCCCCCCCEEECCCHHHHH
MILQQTGPLATTSINRSGQPALTTVEAINQHFPDVFTPLASLWPEPQSTEPLPSTVIKWD
HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEC
GQGWEVLRQGVIQI
CCCHHHHHHHHCCC
>Mature Secondary Structure 
TQLPIAAFIAAARSGRLVSFPTDTVPALAARPDQASQIFAAKQRQPDKPLILMGASPEM
CCCHHHHHHHHHCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCHH
LWPYVRKDGKELNQWQQMAADYWPGALTLVLPACDRVPPAMNPLTPDSIGIRVPNSQVAQ
HHHHHHHCHHHHHHHHHHHHHHCCCCEEHEEHHHCCCCCCCCCCCCCCCEEECCCHHHHH
MILQQTGPLATTSINRSGQPALTTVEAINQHFPDVFTPLASLWPEPQSTEPLPSTVIKWD
HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEC
GQGWEVLRQGVIQI
CCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA