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The map label for this gene is ykwD [H]

Identifier: 158337330

GI number: 158337330

Start: 4228254

End: 4229621

Strand: Reverse

Name: ykwD [H]

Synonym: AM1_4208

Alternate gene names: 158337330

Gene position: 4229621-4228254 (Counterclockwise)

Preceding gene: 158337331

Following gene: 158337322

Centisome position: 65.03

GC content: 47.81

Gene sequence:

>1368_bases
ATGGCGATCTTAAATCGAGACAAATTTGACCAGAAGATTTTGAGTCTGGTTAATCAGGAACGATCTAAAGCCGGGTTGAA
TACCTTATCTTTAAGTCAGAAATTAGATCAAGCAGCGGATGGGCACTCTACCCGCATGGCGACGGGTGATTTCTTCAGTC
ATACCGATCCGCAAACAGGAACGAGTGCAGGAGATCGGATTGAGGCTGCTGGATATACAGGATGGTCTACATGGGGTGAA
AATATTGCTGCAGGGCAGACTACGCCTGAAGCTGTCTTTCAAGGATGGATGCGCAGTTCAGGACATCGAGCGAATATCCT
CAACTCAAGCTTTACCCATATGGGGCTGGGGTACCACGCTTTGAATAACGATACGGGAAGCGTAAATTATTCTCATTATT
GGACCCAAGTCTTTGGTGCGGGCGCTAATCCAGGCAACTATGTTGCGCAAACAGATGGTCAAACCAATCCTCAGGCAAAC
AGCCCACCTTCTACAAATACTGCTACCGCAGGCAATGATTTACTCAACGGGACGAATAAACCCGATAAGATAGCGGGTTT
GGCAGGAAATGACACCATCAAAGGGGCCAATGGGGCTGATACTTTATCTGGAGGGAACGGTTCCGATTCTATCTACGGCC
AAGCCGGAAATGATCTCCTCAATGGCGGGGAGGGCAATGATCGGCTGAAAGGGGAATCAGGAAACGATCTGATTAGAGGG
GGAAGCGGAAACGATTATTTAGAAGGAGGAGCAGGCAAGGATCGGCTGTTTGGAGAGATTGGCAAGGATCGGCTTCGAGG
GGGAAGTAACCGAGATACGCTTGATGGCGCTCAAGGTAACGACTCTCTTTATGGCGATGGTGATAATGATCGGCTGCTCG
GTAGAGATGGTAATGATCGGCTATATGGAGGCTCTGGTCGCGATAAATTGGTCGGTCATAAAGGGAATGACACAATGTTT
GGCGGCCTGGGCAATGACTCCCTTTATGGAGGAAATGGTCGTGATGTCTTGACTGGTATAGCAACCACTTCAAGTACTTC
TAAATCTCAGATAGATAGACTCAAGGGCGGCCCTGGTGGCGATTTGTATATTCTAGGCAACCAATCTCAATCGTTTTATG
ATGACGGCAGAAATAACACCCTTGGTAAGGGAGATTACGCCCATATTGAGGGATTTAAGGTTGCTGAAGGGGATCGCATC
CTTTTGCATGGGTCTGCCAGTGAGTATAGTTTGGGTTCATCACCAACCGGCACTCCTTCTGGACAGGCTATTTTCCTTAA
AACACCTGGCACTGATGAACTTATTGCGGTAGTCAGTGGATCAAGTAACCTGAATTTGAGCGGGTCAGGCTTTAATTACA
CTTCATGA

Upstream 100 bases:

>100_bases
ACAGAAAATAGCGTATTTAAAAGTTAATTAAGCTCGTGATTCACCGCATCTTCACATAGTAGTAATAGCTTGTCAATATT
GACTAATTAAACAGAACAAC

Downstream 100 bases:

>100_bases
TTTGAAGCTATTGGATAAGGAATCAAGCTTGATGGCAAATTGAGCGTCAAGCTTGATTGTTGACACCTTCTGCGACTAGA
TACCCCAATTTGGGTTAAGA

Product: type I secretion target domain/SCP-like extracellular domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MAILNRDKFDQKILSLVNQERSKAGLNTLSLSQKLDQAADGHSTRMATGDFFSHTDPQTGTSAGDRIEAAGYTGWSTWGE
NIAAGQTTPEAVFQGWMRSSGHRANILNSSFTHMGLGYHALNNDTGSVNYSHYWTQVFGAGANPGNYVAQTDGQTNPQAN
SPPSTNTATAGNDLLNGTNKPDKIAGLAGNDTIKGANGADTLSGGNGSDSIYGQAGNDLLNGGEGNDRLKGESGNDLIRG
GSGNDYLEGGAGKDRLFGEIGKDRLRGGSNRDTLDGAQGNDSLYGDGDNDRLLGRDGNDRLYGGSGRDKLVGHKGNDTMF
GGLGNDSLYGGNGRDVLTGIATTSSTSKSQIDRLKGGPGGDLYILGNQSQSFYDDGRNNTLGKGDYAHIEGFKVAEGDRI
LLHGSASEYSLGSSPTGTPSGQAIFLKTPGTDELIAVVSGSSNLNLSGSGFNYTS

Sequences:

>Translated_455_residues
MAILNRDKFDQKILSLVNQERSKAGLNTLSLSQKLDQAADGHSTRMATGDFFSHTDPQTGTSAGDRIEAAGYTGWSTWGE
NIAAGQTTPEAVFQGWMRSSGHRANILNSSFTHMGLGYHALNNDTGSVNYSHYWTQVFGAGANPGNYVAQTDGQTNPQAN
SPPSTNTATAGNDLLNGTNKPDKIAGLAGNDTIKGANGADTLSGGNGSDSIYGQAGNDLLNGGEGNDRLKGESGNDLIRG
GSGNDYLEGGAGKDRLFGEIGKDRLRGGSNRDTLDGAQGNDSLYGDGDNDRLLGRDGNDRLYGGSGRDKLVGHKGNDTMF
GGLGNDSLYGGNGRDVLTGIATTSSTSKSQIDRLKGGPGGDLYILGNQSQSFYDDGRNNTLGKGDYAHIEGFKVAEGDRI
LLHGSASEYSLGSSPTGTPSGQAIFLKTPGTDELIAVVSGSSNLNLSGSGFNYTS
>Mature_454_residues
AILNRDKFDQKILSLVNQERSKAGLNTLSLSQKLDQAADGHSTRMATGDFFSHTDPQTGTSAGDRIEAAGYTGWSTWGEN
IAAGQTTPEAVFQGWMRSSGHRANILNSSFTHMGLGYHALNNDTGSVNYSHYWTQVFGAGANPGNYVAQTDGQTNPQANS
PPSTNTATAGNDLLNGTNKPDKIAGLAGNDTIKGANGADTLSGGNGSDSIYGQAGNDLLNGGEGNDRLKGESGNDLIRGG
SGNDYLEGGAGKDRLFGEIGKDRLRGGSNRDTLDGAQGNDSLYGDGDNDRLLGRDGNDRLYGGSGRDKLVGHKGNDTMFG
GLGNDSLYGGNGRDVLTGIATTSSTSKSQIDRLKGGPGGDLYILGNQSQSFYDDGRNNTLGKGDYAHIEGFKVAEGDRIL
LHGSASEYSLGSSPTGTPSGQAIFLKTPGTDELIAVVSGSSNLNLSGSGFNYTS

Specific function: Unknown

COG id: COG2931

COG function: function code Q; RTX toxins and related Ca2+-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 47264; Mature: 47133

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00330 HEMOLYSIN_CALCIUM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILNRDKFDQKILSLVNQERSKAGLNTLSLSQKLDQAADGHSTRMATGDFFSHTDPQTG
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
TSAGDRIEAAGYTGWSTWGENIAAGQTTPEAVFQGWMRSSGHRANILNSSFTHMGLGYHA
CCCCCEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHCCCCEEE
LNNDTGSVNYSHYWTQVFGAGANPGNYVAQTDGQTNPQANSPPSTNTATAGNDLLNGTNK
ECCCCCCEEHHEEEEHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
PDKIAGLAGNDTIKGANGADTLSGGNGSDSIYGQAGNDLLNGGEGNDRLKGESGNDLIRG
CHHEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEC
GSGNDYLEGGAGKDRLFGEIGKDRLRGGSNRDTLDGAQGNDSLYGDGDNDRLLGRDGNDR
CCCCCCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
LYGGSGRDKLVGHKGNDTMFGGLGNDSLYGGNGRDVLTGIATTSSTSKSQIDRLKGGPGG
EECCCCCCCCEEECCCCCEEECCCCCCEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCC
DLYILGNQSQSFYDDGRNNTLGKGDYAHIEGFKVAEGDRILLHGSASEYSLGSSPTGTPS
CEEEECCCCCHHHCCCCCCCCCCCCEEEECCEEECCCCEEEEECCCCCCCCCCCCCCCCC
GQAIFLKTPGTDELIAVVSGSSNLNLSGSGFNYTS
CCEEEEECCCCCEEEEEEECCCCEEECCCCCCCCC
>Mature Secondary Structure 
AILNRDKFDQKILSLVNQERSKAGLNTLSLSQKLDQAADGHSTRMATGDFFSHTDPQTG
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
TSAGDRIEAAGYTGWSTWGENIAAGQTTPEAVFQGWMRSSGHRANILNSSFTHMGLGYHA
CCCCCEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHCCCCEEE
LNNDTGSVNYSHYWTQVFGAGANPGNYVAQTDGQTNPQANSPPSTNTATAGNDLLNGTNK
ECCCCCCEEHHEEEEHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
PDKIAGLAGNDTIKGANGADTLSGGNGSDSIYGQAGNDLLNGGEGNDRLKGESGNDLIRG
CHHEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEC
GSGNDYLEGGAGKDRLFGEIGKDRLRGGSNRDTLDGAQGNDSLYGDGDNDRLLGRDGNDR
CCCCCCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
LYGGSGRDKLVGHKGNDTMFGGLGNDSLYGGNGRDVLTGIATTSSTSKSQIDRLKGGPGG
EECCCCCCCCEEECCCCCEEECCCCCCEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCC
DLYILGNQSQSFYDDGRNNTLGKGDYAHIEGFKVAEGDRILLHGSASEYSLGSSPTGTPS
CEEEECCCCCHHHCCCCCCCCCCCCEEEECCEEECCCCEEEEECCCCCCCCCCCCCCCCC
GQAIFLKTPGTDELIAVVSGSSNLNLSGSGFNYTS
CCEEEEECCCCCEEEEEEECCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]