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The map label for this gene is pds [H]

Identifier: 158337311

GI number: 158337311

Start: 4213475

End: 4214983

Strand: Reverse

Name: pds [H]

Synonym: AM1_4189

Alternate gene names: 158337311

Gene position: 4214983-4213475 (Counterclockwise)

Preceding gene: 158337315

Following gene: 158337310

Centisome position: 64.81

GC content: 52.49

Gene sequence:

>1509_bases
ATGACATCTGACTCCAAAAAACGTGTTGTCGTCGTTGGTGCTGGCTGGGCTGGCCTCGGTGCCACTTATCACCTTGTGTC
CCAAGGGTATGATGTCACCCTCTTGGAGGCAGGCTCTTATCCGGGTGGCCTGGTAGCGGGTTGGAAAACCGCAGGCGGTC
GCCCTGTTGAAGCCGGGATTCACGGATTTTGGTATCCCTATCAAAATATTTTTGGTTTAGTCGATGAGTTAGGACTCGAT
CCGTTTACAGACTGGACGAAGTCCTCTCAATATTCCCCGGCAGGGCTGGAAGCAGTGTCCCCGATTTTTCAGAAGGAACA
GCGCTTGCCGATGCCTTTGGGAACGTTCGCTTATCCCCAGTTTCCCCGCTTACCGCTGGTGGATCGGCTGTCTGCCTTTA
CGATGATGTATCCAATCATCGACTTTGACAATTCCGATGACGCTTGGCGACGCTACGATTCGGTGACGGCTAGGGAGCTA
TTTAAGAGCTATGGCGTTTCAGCACGGCTCTATCGAGATGCCTTTGAACCGATGCTGTTGGTGGGGTTATTCGCTCCCGG
TGAGCAGTGCTCTGCTGCTGCTGCATTGGGGATGCTCTACTATTTCATTCTGGCCCATCAAGCTGATTTTGATGTGGTTT
GGTGTCGGGGGACGGTGGGAGAGAAAATTTTCAAGCCCTGGTGCGATCGCATCACCAATGCAGGGGGCAAAATCCTCACC
CAGCGCCGAGTGACCGATGTGCGGCTCAATGATTTGGGCCAAGCCGATGCCGTCATTTGCGGGGATGAAGTGTTTGAAGC
CGATGCGGTGATCTTTTCCGTCGGCATTACGGGCATGCAGAACATCGTCCGGGGCAGTTCCACGCTACAACAGCATCCTC
AGTTCCGCGACATGATGAATCTGGGTGCCGTGGATATTTTAGCCACCCGCCTCTGGTTCGACCGCAAAGTCGAGGTTCCT
CAACCGTCCAATGCCTGCTTTGGCTTCCATCCGACAACGGGTTCTACCTTCTTTGACCTCAATGCCCTCCATGATGACTA
TCGCGATCAGCCAGAAACGGTGATTGAGGCGGACTTCTACCATGCCAATCAGTTCTTGGCCATGGAAGATGATGAGATTA
TTTCCATGGTGCAAGATGATTTAATCACCTGTCTTCCCGATTTCCGTGAGGCTAAGGTGGTCGATTCCAGCGTGATTCGC
TTGCCCCGAGCGGTGACCCACTTTGCACCGGGAAGCTATCGGTATTTGTTACCGGCTCAAACTCCAATTAATAATCTATA
TATGAGTGGAGACTGGGTGGTGACTCGTCATGGATCTTGGTCCCAGGAAAAGGCTTATGTGACTGGACTAGAAGCGGCCA
ACCATGTGATTAACCAGTTGGGTCAGGGCTTTCCTGCGTCCATTGCCCCGATTGAACCCGATGAACCCCATATTCAAATG
GCCCGTTCCGTGAATAAGACCGTGCGAGAGCTGCAGAAAAGCCTCTTGCCTGAGTTTTTGTTGCCATAA

Upstream 100 bases:

>100_bases
ATCAGGCTAATTCTTCACTGAATACTACTGTGCATGGACCGCAGATTTCATGTCATGGTGAATAGGGCAATTGGTTACCC
ATCATTCAATCTCTAAAGCT

Downstream 100 bases:

>100_bases
ATGCAAAATCTTACAATCATGACCTATTAATCGAGAATTAATCGAGTTTCAGTTAATCTAGGACTAGAAAGTAAATACGG
CTTCTCTGGAGCAGTGTTTA

Product: zeta-carotene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MTSDSKKRVVVVGAGWAGLGATYHLVSQGYDVTLLEAGSYPGGLVAGWKTAGGRPVEAGIHGFWYPYQNIFGLVDELGLD
PFTDWTKSSQYSPAGLEAVSPIFQKEQRLPMPLGTFAYPQFPRLPLVDRLSAFTMMYPIIDFDNSDDAWRRYDSVTAREL
FKSYGVSARLYRDAFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQADFDVVWCRGTVGEKIFKPWCDRITNAGGKILT
QRRVTDVRLNDLGQADAVICGDEVFEADAVIFSVGITGMQNIVRGSSTLQQHPQFRDMMNLGAVDILATRLWFDRKVEVP
QPSNACFGFHPTTGSTFFDLNALHDDYRDQPETVIEADFYHANQFLAMEDDEIISMVQDDLITCLPDFREAKVVDSSVIR
LPRAVTHFAPGSYRYLLPAQTPINNLYMSGDWVVTRHGSWSQEKAYVTGLEAANHVINQLGQGFPASIAPIEPDEPHIQM
ARSVNKTVRELQKSLLPEFLLP

Sequences:

>Translated_502_residues
MTSDSKKRVVVVGAGWAGLGATYHLVSQGYDVTLLEAGSYPGGLVAGWKTAGGRPVEAGIHGFWYPYQNIFGLVDELGLD
PFTDWTKSSQYSPAGLEAVSPIFQKEQRLPMPLGTFAYPQFPRLPLVDRLSAFTMMYPIIDFDNSDDAWRRYDSVTAREL
FKSYGVSARLYRDAFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQADFDVVWCRGTVGEKIFKPWCDRITNAGGKILT
QRRVTDVRLNDLGQADAVICGDEVFEADAVIFSVGITGMQNIVRGSSTLQQHPQFRDMMNLGAVDILATRLWFDRKVEVP
QPSNACFGFHPTTGSTFFDLNALHDDYRDQPETVIEADFYHANQFLAMEDDEIISMVQDDLITCLPDFREAKVVDSSVIR
LPRAVTHFAPGSYRYLLPAQTPINNLYMSGDWVVTRHGSWSQEKAYVTGLEAANHVINQLGQGFPASIAPIEPDEPHIQM
ARSVNKTVRELQKSLLPEFLLP
>Mature_501_residues
TSDSKKRVVVVGAGWAGLGATYHLVSQGYDVTLLEAGSYPGGLVAGWKTAGGRPVEAGIHGFWYPYQNIFGLVDELGLDP
FTDWTKSSQYSPAGLEAVSPIFQKEQRLPMPLGTFAYPQFPRLPLVDRLSAFTMMYPIIDFDNSDDAWRRYDSVTARELF
KSYGVSARLYRDAFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQADFDVVWCRGTVGEKIFKPWCDRITNAGGKILTQ
RRVTDVRLNDLGQADAVICGDEVFEADAVIFSVGITGMQNIVRGSSTLQQHPQFRDMMNLGAVDILATRLWFDRKVEVPQ
PSNACFGFHPTTGSTFFDLNALHDDYRDQPETVIEADFYHANQFLAMEDDEIISMVQDDLITCLPDFREAKVVDSSVIRL
PRAVTHFAPGSYRYLLPAQTPINNLYMSGDWVVTRHGSWSQEKAYVTGLEAANHVINQLGQGFPASIAPIEPDEPHIQMA
RSVNKTVRELQKSLLPEFLLP

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 55923; Mature: 55792

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDSKKRVVVVGAGWAGLGATYHLVSQGYDVTLLEAGSYPGGLVAGWKTAGGRPVEAGI
CCCCCCCEEEEEECCCHHHCHHHHHHHCCCCEEEEECCCCCCCEEECCCCCCCCEEECCC
HGFWYPYQNIFGLVDELGLDPFTDWTKSSQYSPAGLEAVSPIFQKEQRLPMPLGTFAYPQ
CEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
FPRLPLVDRLSAFTMMYPIIDFDNSDDAWRRYDSVTARELFKSYGVSARLYRDAFEPMLL
CCCCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEE
VGLFAPGEQCSAAAALGMLYYFILAHQADFDVVWCRGTVGEKIFKPWCDRITNAGGKILT
EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEE
QRRVTDVRLNDLGQADAVICGDEVFEADAVIFSVGITGMQNIVRGSSTLQQHPQFRDMMN
CCCCCEECHHCCCCCCEEEECCHHHHHCCEEEECCHHHHHHHHHCCHHHHHCHHHHHHHH
LGAVDILATRLWFDRKVEVPQPSNACFGFHPTTGSTFFDLNALHDDYRDQPETVIEADFY
CCHHHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCEEECHHHHHHHCCCCCCEEEECEE
HANQFLAMEDDEIISMVQDDLITCLPDFREAKVVDSSVIRLPRAVTHFAPGSYRYLLPAQ
ECCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
TPINNLYMSGDWVVTRHGSWSQEKAYVTGLEAANHVINQLGQGFPASIAPIEPDEPHIQM
CCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
ARSVNKTVRELQKSLLPEFLLP
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSDSKKRVVVVGAGWAGLGATYHLVSQGYDVTLLEAGSYPGGLVAGWKTAGGRPVEAGI
CCCCCCEEEEEECCCHHHCHHHHHHHCCCCEEEEECCCCCCCEEECCCCCCCCEEECCC
HGFWYPYQNIFGLVDELGLDPFTDWTKSSQYSPAGLEAVSPIFQKEQRLPMPLGTFAYPQ
CEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
FPRLPLVDRLSAFTMMYPIIDFDNSDDAWRRYDSVTARELFKSYGVSARLYRDAFEPMLL
CCCCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEE
VGLFAPGEQCSAAAALGMLYYFILAHQADFDVVWCRGTVGEKIFKPWCDRITNAGGKILT
EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEE
QRRVTDVRLNDLGQADAVICGDEVFEADAVIFSVGITGMQNIVRGSSTLQQHPQFRDMMN
CCCCCEECHHCCCCCCEEEECCHHHHHCCEEEECCHHHHHHHHHCCHHHHHCHHHHHHHH
LGAVDILATRLWFDRKVEVPQPSNACFGFHPTTGSTFFDLNALHDDYRDQPETVIEADFY
CCHHHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCEEECHHHHHHHCCCCCCEEEECEE
HANQFLAMEDDEIISMVQDDLITCLPDFREAKVVDSSVIRLPRAVTHFAPGSYRYLLPAQ
ECCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
TPINNLYMSGDWVVTRHGSWSQEKAYVTGLEAANHVINQLGQGFPASIAPIEPDEPHIQM
CCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
ARSVNKTVRELQKSLLPEFLLP
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]