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The map label for this gene is yrvN [H]

Identifier: 158337198

GI number: 158337198

Start: 4122672

End: 4124900

Strand: Direct

Name: yrvN [H]

Synonym: AM1_4075

Alternate gene names: 158337198

Gene position: 4122672-4124900 (Clockwise)

Preceding gene: 158337197

Following gene: 158337201

Centisome position: 63.39

GC content: 51.41

Gene sequence:

>2229_bases
ATGGATTTATTTGAGCAGCATCGTCAACAGCTTTTAGAAACGGAGGCTCCCCTGGCTGCACGGTTACGTCCCCGCACTTT
GGATGAGTTTGTGGGCCAGGATGAGATTGTTGGCCCAGGACGATTATTGCGGCGTGCAATCCAGGCGGATCAACTTTCTT
CTCTGATTTTCTATGGCCCTCCGGGCACGGGCAAAACCACCCTGGCCCAGATTATTGCCAATACCACCCAAGCCCATTTT
CTGGCCCTGAATGCGGTCTTAGCTGGCATCAAAGATATTCGCTCATCCGTGGATGAAGCCCAGGACCGACGGGGGCAATA
TGGTCAACGCACGATTTTGTTTGTGGATGAAGTGCATCGGTTCAATAAAGCCCAGCAAGATGCCTTGCTGCCCTGGGTGG
AGAATGGCACGGTGATTTTAATTGGGGCGACCACCGAAAATCCCTATTTTGAGGTCAACAAAGCCCTGGTGAGCCGATCT
CGAATTTTTCAGTTGCGATCCCTGATGCCAGACGACCTTCGGCAGGTGCTAGAGCGGGCCTTGCAGGATAAATATTTTGG
CTATGGTGATACGGCCATTGAGTTGGAAGGAGCCGCAACGGAGCACCTGATTAATGTGGCGAATGGGGATGCCAGAGCGT
TGCTGAATGCTTTAGAGCTGGCGATTGAAACCACCGAGCCCGATGACCAGGGTGTGATTCCCATTACCTTGGCTGTCGCG
GAAGCCTCTATCCAACGGCGGGCAGTTCTCTATGACAAAGAGGGTGATGCCCATTTTGATACGATCAGCGCCTTTATCAA
AAGTATGCGGGGGTCAGACCCCGATGCGGCCCTTTACTGGTTAGCCCGTATGGTCTATGCCGGAGAAGATCCGCGCTTTA
TCTTTCGTCGGATGATCATTTTAGCCAGTGAGGATGTGGGGTTGGCGGATCCGCAAGCCGTCGGTGTGGTGATGGCTTGT
GCTCAAGCCTTTGATCGCATTGGGTTACCTGAGGGGCAATATCCTTTGGCCCAGGCAGCCCTTTATTTATCGACTGCTCC
CAAGTCCAATAGCGCTTTGGCCTATTTCGATGCCTTGGCCTCGGTTGAGAAGGAACGGGAGGGGGATGTTCCTAATCCCC
TTAGGGATAAAAGTCGTGACAAACATGCCTTTGGCCATGGCGCTAACTATAAATATCCCCATGCTTATCGCGATCACTGG
GTTGCCCAACAATATTTACCGGACAGTCTTCAAGGACAGGTCTTTTACCAACCGTCCGATCAAGGAGCTGAAGCGGCGAT
TCAAACCCAGATTGCGCGTCAGCGGGAAGCCCAACTCTCTGGAATTTCGGAGACGAGTACCCAAGAGACGGTCAGTTATG
GCCCGAAAGATTCGAAGCGGGAACGGTGGTTACAGCGCACTATGAGTCAAACGGGCGATCATGCGGCTTGGGTACGCGAT
CGCATTTTCAGTTTCACTCAAATTCAACGTCATCATGTGGTTCTGGAGGTCTGCAGCCAAACGGGGCTACTCACCTGGGA
AGCGTTACGACGGACTCCGGAAGGCAGTGTCTATACCCACGTTTCCTCAGATAAAGTCGCTCAGACCCTGGAAGCGCAAG
TGAAGGCCCTTTCAGCCTTGCAACGGCCTATTTGTGTCGCAGGGTCGAGTTCTGACCTTAAAACTCTGATCTATGACCAT
ACACCCGATCTGCAGTTTGATTGGATTCTAGGTCGGAATACCTTTGCGAATCAGATGCATCAACTGGATCGGCCAGCCGC
TGAAAACCTGGCCCAACAGCTGATCAGCCTTCTGAGGCCGGAGGGGCAGATCGTTCTAGCGGAAACGATTCCCAAATATG
GGCAACGGATCTGTGACTTGGTGAAGGCAGAGGATGTAGGTCAGGCGTTGTATCAGCGTTGGCAAACGGCTGAAGCCGCC
TTATATCAAGGTGATACGGGCGATACGCAACTCACTTGGGATGAATCTGATCTACAAACTGCATTTGCTGATCAACCGAT
CACAATAGACTTAGAACAAACTGACATGAGCCTATATGTCACTCCTAAGTTGATTGAACGGTGGTTTGCGACAAGTGGTG
ATCGCCTTTCTTATGGAAAGCGTCTAGGGCAGCATTGTTCAGCGACAGATGTGAAACAGATTCAAGCACTGTTGACTCAG
AAGTTATTGCACCAAACCATTCAGTGGCAAACTACTCTTGCATTTGTCCATGTCCGCTGTGCTAAATAA

Upstream 100 bases:

>100_bases
CCCTCACCATCATGCGGAAGAATCAGAAACGCCAAGCCCAACTGGAAGTGGGCACCCTCAAACCTAAAACCTTCTCGCGA
CGGTCTTAAGCACTGAGGCG

Downstream 100 bases:

>100_bases
GTACAGCAAATGATACTGATCTTGGCACCCTTACAACTGGCTACATTTTTTAACTGCTTTGTTAAGGTCATAATCATCAG
GGTTAGCTGCTAGTAATTCT

Product: recombination factor protein RarA/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 742; Mature: 742

Protein sequence:

>742_residues
MDLFEQHRQQLLETEAPLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTTLAQIIANTTQAHF
LALNAVLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRS
RIFQLRSLMPDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPDDQGVIPITLAVA
EASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAGEDPRFIFRRMIILASEDVGLADPQAVGVVMAC
AQAFDRIGLPEGQYPLAQAALYLSTAPKSNSALAYFDALASVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHW
VAQQYLPDSLQGQVFYQPSDQGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRERWLQRTMSQTGDHAAWVRD
RIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHVSSDKVAQTLEAQVKALSALQRPICVAGSSSDLKTLIYDH
TPDLQFDWILGRNTFANQMHQLDRPAAENLAQQLISLLRPEGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAA
LYQGDTGDTQLTWDESDLQTAFADQPITIDLEQTDMSLYVTPKLIERWFATSGDRLSYGKRLGQHCSATDVKQIQALLTQ
KLLHQTIQWQTTLAFVHVRCAK

Sequences:

>Translated_742_residues
MDLFEQHRQQLLETEAPLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTTLAQIIANTTQAHF
LALNAVLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRS
RIFQLRSLMPDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPDDQGVIPITLAVA
EASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAGEDPRFIFRRMIILASEDVGLADPQAVGVVMAC
AQAFDRIGLPEGQYPLAQAALYLSTAPKSNSALAYFDALASVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHW
VAQQYLPDSLQGQVFYQPSDQGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRERWLQRTMSQTGDHAAWVRD
RIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHVSSDKVAQTLEAQVKALSALQRPICVAGSSSDLKTLIYDH
TPDLQFDWILGRNTFANQMHQLDRPAAENLAQQLISLLRPEGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAA
LYQGDTGDTQLTWDESDLQTAFADQPITIDLEQTDMSLYVTPKLIERWFATSGDRLSYGKRLGQHCSATDVKQIQALLTQ
KLLHQTIQWQTTLAFVHVRCAK
>Mature_742_residues
MDLFEQHRQQLLETEAPLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTTLAQIIANTTQAHF
LALNAVLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRS
RIFQLRSLMPDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPDDQGVIPITLAVA
EASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAGEDPRFIFRRMIILASEDVGLADPQAVGVVMAC
AQAFDRIGLPEGQYPLAQAALYLSTAPKSNSALAYFDALASVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHW
VAQQYLPDSLQGQVFYQPSDQGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRERWLQRTMSQTGDHAAWVRD
RIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHVSSDKVAQTLEAQVKALSALQRPICVAGSSSDLKTLIYDH
TPDLQFDWILGRNTFANQMHQLDRPAAENLAQQLISLLRPEGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAA
LYQGDTGDTQLTWDESDLQTAFADQPITIDLEQTDMSLYVTPKLIERWFATSGDRLSYGKRLGQHCSATDVKQIQALLTQ
KLLHQTIQWQTTLAFVHVRCAK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=445, Percent_Identity=39.3258426966292, Blast_Score=308, Evalue=2e-83,
Organism=Homo sapiens, GI18426904, Length=445, Percent_Identity=35.5056179775281, Blast_Score=258, Evalue=2e-68,
Organism=Escherichia coli, GI1787119, Length=419, Percent_Identity=44.6300715990453, Blast_Score=354, Evalue=1e-98,
Organism=Escherichia coli, GI1788167, Length=125, Percent_Identity=31.2, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=35.5608591885441, Blast_Score=254, Evalue=4e-68,
Organism=Saccharomyces cerevisiae, GI6324039, Length=275, Percent_Identity=26.1818181818182, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 82993; Mature: 82993

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFEQHRQQLLETEAPLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLSSLIFYGP
CCHHHHHHHHHHHCCCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEECC
PGTGKTTLAQIIANTTQAHFLALNAVLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHR
CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
FNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRSRIFQLRSLMPDDLRQVLERA
HCHHHHHCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPDDQGVIPITLAVA
HHHHCCCCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCEEEEEEEHH
EASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAGEDPRFIFRRMII
HHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
LASEDVGLADPQAVGVVMACAQAFDRIGLPEGQYPLAQAALYLSTAPKSNSALAYFDALA
HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
SVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHWVAQQYLPDSLQGQVFYQPSD
HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCC
QGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRERWLQRTMSQTGDHAAWVRD
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
RIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHVSSDKVAQTLEAQVKALSAL
HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
QRPICVAGSSSDLKTLIYDHTPDLQFDWILGRNTFANQMHQLDRPAAENLAQQLISLLRP
CCCEEEECCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
EGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAALYQGDTGDTQLTWDESDLQT
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHH
AFADQPITIDLEQTDMSLYVTPKLIERWFATSGDRLSYGKRLGQHCSATDVKQIQALLTQ
HHCCCCEEEEEECCCCEEEECHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
KLLHQTIQWQTTLAFVHVRCAK
HHHHHHHHHHHEEEEEEEEECC
>Mature Secondary Structure
MDLFEQHRQQLLETEAPLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLSSLIFYGP
CCHHHHHHHHHHHCCCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEECC
PGTGKTTLAQIIANTTQAHFLALNAVLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHR
CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
FNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRSRIFQLRSLMPDDLRQVLERA
HCHHHHHCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPDDQGVIPITLAVA
HHHHCCCCCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCEEEEEEEHH
EASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAGEDPRFIFRRMII
HHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
LASEDVGLADPQAVGVVMACAQAFDRIGLPEGQYPLAQAALYLSTAPKSNSALAYFDALA
HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
SVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHWVAQQYLPDSLQGQVFYQPSD
HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCC
QGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRERWLQRTMSQTGDHAAWVRD
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
RIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHVSSDKVAQTLEAQVKALSAL
HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
QRPICVAGSSSDLKTLIYDHTPDLQFDWILGRNTFANQMHQLDRPAAENLAQQLISLLRP
CCCEEEECCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
EGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAALYQGDTGDTQLTWDESDLQT
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHH
AFADQPITIDLEQTDMSLYVTPKLIERWFATSGDRLSYGKRLGQHCSATDVKQIQALLTQ
HHCCCCEEEEEECCCCEEEECHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
KLLHQTIQWQTTLAFVHVRCAK
HHHHHHHHHHHEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]