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The map label for this gene is ybbK [C]

Identifier: 158337098

GI number: 158337098

Start: 4019518

End: 4020471

Strand: Reverse

Name: ybbK [C]

Synonym: AM1_3971

Alternate gene names: 158337098

Gene position: 4020471-4019518 (Counterclockwise)

Preceding gene: 158337099

Following gene: 158337097

Centisome position: 61.82

GC content: 45.07

Gene sequence:

>954_bases
GTGTGGCAATTCATAACAGTTATTTTTATAGCTATAGGTGGGGCTGGTGCAGCTAGCTCCGTACGCATTATTAATCAAGG
GAATGCTGCTCTAGTCGAAAACTTAGGAAGTTATAAAAAACGTCTAGATCCAGGATTAAATATTATTTTTCCTGTGCTCG
ACCAAATCGTCTATAAAGACACATTAAGACTAAAAGTACTAGATATTGACCCTCAATCTTGTATTACTTGTGATAATGTC
GCTATTACGGTCGATGCTGTGGTTTATTGGCAAATTATCGATATGGAGAAAGCCTATTACAAGGTTGAGAATCTCTCATC
TGCCATGGTCAATCTGGTCCAAACTCAAATTCGAGCCGAGATGGGTAAGCTCGAACTGGATGAAACCTTTACAGCACGCA
CCCAAATCAGCGAAATCCTCCTGCAAGAACTAGATAGTGCAACCGATCCTTGGGGAGTGAAAGTCACACGGGTTGAGCTA
CGGGATATCACCCCTTCTCAAGCCGTCCAAGATTCCATGGAACTTCAAATGGCTGCCGAACGCCAAAAAAGAGCTGCTAT
CTTAACATCTGAGGGCGAAAAAGAAGCAGCTGTTAACTCCGCTCGTGGGTCTGCCGAAGCCCAAGTTTTAGCCGCTGAAG
CCCGTAAGAAATCTGCCATTTTAGAAGCCGAAGCAGAGCAGCAATCTATCGTTCTTAGAGCCCAGGGTGAACGTCAGGAT
CGCGTATTGCGGGCCCATGCCACTTCAGAAGCATTGCAGATTGTCACTCAAGCCCTAAAAAAAGACCCTAAAGCTGAACA
GGCTCTACAGTTTCTGTTAGCTCAGAACTATATGGATATGGGGGCAACTATCGGCGAAAGCGACAGCAGCAAGGTGATGT
TTATGGATCCTCGATCAGTTCCTGCGTCTATTGAAGGGATTCGTTCCATCATCGATGATTCAGGCCAAGCTTAA

Upstream 100 bases:

>100_bases
GGAACGACCTTGTTCGTCATTCCTACTGAATTTGGGGAAGGTCTGACCTTTCATTCAGAATCGTAAAATACCTGAGATTT
ATTTACGTGGGGTTAGTATT

Downstream 100 bases:

>100_bases
GGAAGGGTTGGCATTCTAGAGTAGATTGCTTACCCTAGATTGAAGCCAATACACATCTAAACCAAGTACCCTATGAAACT
GGATCAATTTCTGAAATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MWQFITVIFIAIGGAGAASSVRIINQGNAALVENLGSYKKRLDPGLNIIFPVLDQIVYKDTLRLKVLDIDPQSCITCDNV
AITVDAVVYWQIIDMEKAYYKVENLSSAMVNLVQTQIRAEMGKLELDETFTARTQISEILLQELDSATDPWGVKVTRVEL
RDITPSQAVQDSMELQMAAERQKRAAILTSEGEKEAAVNSARGSAEAQVLAAEARKKSAILEAEAEQQSIVLRAQGERQD
RVLRAHATSEALQIVTQALKKDPKAEQALQFLLAQNYMDMGATIGESDSSKVMFMDPRSVPASIEGIRSIIDDSGQA

Sequences:

>Translated_317_residues
MWQFITVIFIAIGGAGAASSVRIINQGNAALVENLGSYKKRLDPGLNIIFPVLDQIVYKDTLRLKVLDIDPQSCITCDNV
AITVDAVVYWQIIDMEKAYYKVENLSSAMVNLVQTQIRAEMGKLELDETFTARTQISEILLQELDSATDPWGVKVTRVEL
RDITPSQAVQDSMELQMAAERQKRAAILTSEGEKEAAVNSARGSAEAQVLAAEARKKSAILEAEAEQQSIVLRAQGERQD
RVLRAHATSEALQIVTQALKKDPKAEQALQFLLAQNYMDMGATIGESDSSKVMFMDPRSVPASIEGIRSIIDDSGQA
>Mature_317_residues
MWQFITVIFIAIGGAGAASSVRIINQGNAALVENLGSYKKRLDPGLNIIFPVLDQIVYKDTLRLKVLDIDPQSCITCDNV
AITVDAVVYWQIIDMEKAYYKVENLSSAMVNLVQTQIRAEMGKLELDETFTARTQISEILLQELDSATDPWGVKVTRVEL
RDITPSQAVQDSMELQMAAERQKRAAILTSEGEKEAAVNSARGSAEAQVLAAEARKKSAILEAEAEQQSIVLRAQGERQD
RVLRAHATSEALQIVTQALKKDPKAEQALQFLLAQNYMDMGATIGESDSSKVMFMDPRSVPASIEGIRSIIDDSGQA

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=206, Percent_Identity=41.747572815534, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI38016911, Length=197, Percent_Identity=32.994923857868, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI21686995, Length=197, Percent_Identity=32.994923857868, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI221316744, Length=197, Percent_Identity=32.994923857868, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI7657615, Length=171, Percent_Identity=26.9005847953216, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786697, Length=318, Percent_Identity=39.622641509434, Blast_Score=214, Evalue=8e-57,
Organism=Caenorhabditis elegans, GI32564147, Length=286, Percent_Identity=34.965034965035, Blast_Score=170, Evalue=7e-43,
Organism=Caenorhabditis elegans, GI17569493, Length=175, Percent_Identity=35.4285714285714, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI193209764, Length=175, Percent_Identity=35.4285714285714, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17569499, Length=184, Percent_Identity=32.6086956521739, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71989948, Length=179, Percent_Identity=33.5195530726257, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71989955, Length=179, Percent_Identity=33.5195530726257, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25153583, Length=197, Percent_Identity=31.9796954314721, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71987612, Length=154, Percent_Identity=35.7142857142857, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71987621, Length=204, Percent_Identity=32.3529411764706, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17569497, Length=207, Percent_Identity=28.0193236714976, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17570161, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32566490, Length=154, Percent_Identity=32.4675324675325, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193210507, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17570459, Length=181, Percent_Identity=32.5966850828729, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550506, Length=280, Percent_Identity=35, Blast_Score=173, Evalue=1e-43,
Organism=Drosophila melanogaster, GI45556022, Length=154, Percent_Identity=39.6103896103896, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI281365664, Length=154, Percent_Identity=37.012987012987, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24657857, Length=154, Percent_Identity=37.012987012987, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI62484448, Length=154, Percent_Identity=37.012987012987, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI62484274, Length=154, Percent_Identity=37.012987012987, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI21356845, Length=163, Percent_Identity=34.3558282208589, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI18860517, Length=199, Percent_Identity=33.1658291457286, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI281361631, Length=197, Percent_Identity=29.9492385786802, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281361633, Length=197, Percent_Identity=29.9492385786802, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI28573263, Length=201, Percent_Identity=25.8706467661692, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281361635, Length=136, Percent_Identity=33.8235294117647, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34788; Mature: 34788

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQFITVIFIAIGGAGAASSVRIINQGNAALVENLGSYKKRLDPGLNIIFPVLDQIVYKD
CHHHHEEHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHC
TLRLKVLDIDPQSCITCDNVAITVDAVVYWQIIDMEKAYYKVENLSSAMVNLVQTQIRAE
CEEEEEEEECCCCCEEECCEEEEEEHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKLELDETFTARTQISEILLQELDSATDPWGVKVTRVELRDITPSQAVQDSMELQMAAE
HCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH
RQKRAAILTSEGEKEAAVNSARGSAEAQVLAAEARKKSAILEAEAEQQSIVLRAQGERQD
HHHHHEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH
RVLRAHATSEALQIVTQALKKDPKAEQALQFLLAQNYMDMGATIGESDSSKVMFMDPRSV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
PASIEGIRSIIDDSGQA
CHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MWQFITVIFIAIGGAGAASSVRIINQGNAALVENLGSYKKRLDPGLNIIFPVLDQIVYKD
CHHHHEEHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHC
TLRLKVLDIDPQSCITCDNVAITVDAVVYWQIIDMEKAYYKVENLSSAMVNLVQTQIRAE
CEEEEEEEECCCCCEEECCEEEEEEHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKLELDETFTARTQISEILLQELDSATDPWGVKVTRVELRDITPSQAVQDSMELQMAAE
HCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH
RQKRAAILTSEGEKEAAVNSARGSAEAQVLAAEARKKSAILEAEAEQQSIVLRAQGERQD
HHHHHEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH
RVLRAHATSEALQIVTQALKKDPKAEQALQFLLAQNYMDMGATIGESDSSKVMFMDPRSV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
PASIEGIRSIIDDSGQA
CHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]