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The map label for this gene is yjcF [C]

Identifier: 158337004

GI number: 158337004

Start: 3929170

End: 3930006

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_3876

Alternate gene names: 158337004

Gene position: 3930006-3929170 (Counterclockwise)

Preceding gene: 158337005

Following gene: 158337001

Centisome position: 60.43

GC content: 49.82

Gene sequence:

>837_bases
ATGAGCAAGTACAAGTCTGCCATGGCAGGGGAACACCTAGCCCTTTTATATCGTGGCCCTGAAGTTTGGAATCAGTGGCG
ACAGGATAATAGCCATAAATCTCCGAATCTCGCAGGCTGTAACCTAGGGCAAATGGATTTACAGGCCTTCGACCTCAGCC
ATACAGATCTGACGGCTGCCAATTTACGGAAAGCCAACTTAATCGGCGTCAACTTAAGCAATAGTTTTTTGTGTGGTGCC
AACTTAATCGAAGCTCAGCTGACAGGGATTCAAGGCGTTGCCATTAATCTCCACCATGCTCAGGTGCATGGGGCTGATCT
CAGAGATGCCAATTTAATTGGCGGAGATTTAGGCGAGGCGGTGTTGTTAGACGCTGAACTCAGCCGAGCCAACTTAGTAG
GGTGTAGCTTAAAACATGCAGATATTCGGCGAGCAGAACTAGAAGCCGCCCAACTGCACAGAGCAGATTTAAGTTTTGCG
GAACTCGAAGCCGCCAACCTGATTCAGGCAGACCTCAGTCAGGCAAATTTAAGCTATGCGACCTTAACTGGGGCGTATTT
ATACGGAGCCGATCTGAGTCGCGCCAATCTGCGAGCTGCCCACTGTAGCCAAGCCTATCTCGTTCGGGCGAATTTTACGG
ATATCAATGCCGAAGCGGCTGATCTGGCCTGGTGTAATTTGAGCAAGGTAAATTTTGCCGGAGCTAATTTACGACGGACC
AATTTACGAGGAGCGCGACTGCATCGTGCTCAGTTTTATCAAACCTGCTTAGAAGGAGCAGTCTGGGACTTAGCTAGTTT
AGAGCAGGCCAGAGGATTCCCCAGCCTCAGCTGCTAG

Upstream 100 bases:

>100_bases
CTGAGCGAGATATCAAAACTGCAGCGGCGGCTGTGGTAGATGCCCTTGAGCATGTGCCTGGACGAGAGCCTCTGGGCGGC
AAGCGCAATGAATAGCTGAG

Downstream 100 bases:

>100_bases
TTTCCTTGAGTGTGTAGCAGATTCATCAGCTGTTGCGCTTCTTCCTGCCAAAAGTGACCTTGAGATTTACAGGGAATAGA
CAGCAAAATCCGATCAAAGG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSKYKSAMAGEHLALLYRGPEVWNQWRQDNSHKSPNLAGCNLGQMDLQAFDLSHTDLTAANLRKANLIGVNLSNSFLCGA
NLIEAQLTGIQGVAINLHHAQVHGADLRDANLIGGDLGEAVLLDAELSRANLVGCSLKHADIRRAELEAAQLHRADLSFA
ELEAANLIQADLSQANLSYATLTGAYLYGADLSRANLRAAHCSQAYLVRANFTDINAEAADLAWCNLSKVNFAGANLRRT
NLRGARLHRAQFYQTCLEGAVWDLASLEQARGFPSLSC

Sequences:

>Translated_278_residues
MSKYKSAMAGEHLALLYRGPEVWNQWRQDNSHKSPNLAGCNLGQMDLQAFDLSHTDLTAANLRKANLIGVNLSNSFLCGA
NLIEAQLTGIQGVAINLHHAQVHGADLRDANLIGGDLGEAVLLDAELSRANLVGCSLKHADIRRAELEAAQLHRADLSFA
ELEAANLIQADLSQANLSYATLTGAYLYGADLSRANLRAAHCSQAYLVRANFTDINAEAADLAWCNLSKVNFAGANLRRT
NLRGARLHRAQFYQTCLEGAVWDLASLEQARGFPSLSC
>Mature_277_residues
SKYKSAMAGEHLALLYRGPEVWNQWRQDNSHKSPNLAGCNLGQMDLQAFDLSHTDLTAANLRKANLIGVNLSNSFLCGAN
LIEAQLTGIQGVAINLHHAQVHGADLRDANLIGGDLGEAVLLDAELSRANLVGCSLKHADIRRAELEAAQLHRADLSFAE
LEAANLIQADLSQANLSYATLTGAYLYGADLSRANLRAAHCSQAYLVRANFTDINAEAADLAWCNLSKVNFAGANLRRTN
LRGARLHRAQFYQTCLEGAVWDLASLEQARGFPSLSC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Drosophila melanogaster, GI221377802, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 30110; Mature: 29979

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYKSAMAGEHLALLYRGPEVWNQWRQDNSHKSPNLAGCNLGQMDLQAFDLSHTDLTAA
CCCHHHHHCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH
NLRKANLIGVNLSNSFLCGANLIEAQLTGIQGVAINLHHAQVHGADLRDANLIGGDLGEA
HCCCCEEEEEECCCCEEECCHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCE
VLLDAELSRANLVGCSLKHADIRRAELEAAQLHRADLSFAELEAANLIQADLSQANLSYA
EEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEE
TLTGAYLYGADLSRANLRAAHCSQAYLVRANFTDINAEAADLAWCNLSKVNFAGANLRRT
EEECEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCCCHHHEEEECCCCEEECCCCEEEC
NLRGARLHRAQFYQTCLEGAVWDLASLEQARGFPSLSC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKYKSAMAGEHLALLYRGPEVWNQWRQDNSHKSPNLAGCNLGQMDLQAFDLSHTDLTAA
CCHHHHHCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH
NLRKANLIGVNLSNSFLCGANLIEAQLTGIQGVAINLHHAQVHGADLRDANLIGGDLGEA
HCCCCEEEEEECCCCEEECCHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCE
VLLDAELSRANLVGCSLKHADIRRAELEAAQLHRADLSFAELEAANLIQADLSQANLSYA
EEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEE
TLTGAYLYGADLSRANLRAAHCSQAYLVRANFTDINAEAADLAWCNLSKVNFAGANLRRT
EEECEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCCCHHHEEEECCCCEEECCCCEEEC
NLRGARLHRAQFYQTCLEGAVWDLASLEQARGFPSLSC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA