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The map label for this gene is yjfH [C]

Identifier: 158336981

GI number: 158336981

Start: 3907175

End: 3908014

Strand: Reverse

Name: yjfH [C]

Synonym: AM1_3854

Alternate gene names: 158336981

Gene position: 3908014-3907175 (Counterclockwise)

Preceding gene: 158336982

Following gene: 158336979

Centisome position: 60.09

GC content: 48.57

Gene sequence:

>840_bases
ATGGTCAGTAGGAAAAGTGCTGACTGTTCTGCATCCAGTGTTGCCGCAACACTTCATCGTATTAAAAGACTACAGACCGA
TCGGAGATATCGCGATGCTCAAGGGGCTTGCTTTATTGAAGGAGTACGTAACTTTGTACACGTGTCTGATAGCCGCCTCG
ATATTGCTGTTATTGTCTATAGCGAAAAGCTCCTAACAGCGCCTTTAGCTCGCAAGCTGGTCCGACGCTTTCGTCGGTCT
GGGGTAGAGACGATTTCGGTGTCTCCAGAACAATTTCGCGGAATTTCTCAAACTCATCGGGCTTCAGGGATAGGAGCCAT
TATTCGACAACGATGGCAGCGCTTACCATCGATCACGCCCAGTATGGGATTGTGGGTGATTCTAGATCGAGTGCGATCCT
TGGGGAATTTTGGCACTTTGATCCGCACCCTAGACGCGGGGGGTGGCACTGGATTTATTCTCCTAAATCAGGCGGTTGAT
CCGTATGCACCGTCTACGGTTCGGGCCTCTATGGGGTCAGTATTTCAGCAACAATTTATTCGGACTCATGATCAGGCCTT
GTCTCAGTGGCTGCAACAGCATCAAGGCTATGTGATTGGTGCTTCTCCCGATGGCGAGGAAAATTTTCACACCTTTACCT
ATCCCAAAAATACACTGCTATTTTTAGGTGAGGAACGCACAGGGTTGTCTCCAAAACAGCGGTCCCTGTGCAATACTCTC
CTCAAGATTCCCATGGTGGGTCAGGTTGATTCTTTAAATGTGGCAGTTGCAGGGAGTTTATTTATCTATGAAGTCCTGCG
ATCACGTATGTTGGATAGCAGTGACTTCAGGGGCAACTAG

Upstream 100 bases:

>100_bases
TTCTCATTCCTCATCGCTTCAAGTTCCAGGCAAAGCCTGATTCCGTCCATGAATATTGCATATACTCATATTCACTCCCT
GATCCAGCAGGGTAAGGAGG

Downstream 100 bases:

>100_bases
GCTTCAGCATCCTGAGATGGCCCTGCGGAATAAGTAAACGCCCCATGCCGAAGAGAATTATTCAGAGGCTGGTTTAGGTA
GATATCCTTCTACGAGGCAG

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MVSRKSADCSASSVAATLHRIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVYSEKLLTAPLARKLVRRFRRS
GVETISVSPEQFRGISQTHRASGIGAIIRQRWQRLPSITPSMGLWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVD
PYAPSTVRASMGSVFQQQFIRTHDQALSQWLQQHQGYVIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTL
LKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDSSDFRGN

Sequences:

>Translated_279_residues
MVSRKSADCSASSVAATLHRIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVYSEKLLTAPLARKLVRRFRRS
GVETISVSPEQFRGISQTHRASGIGAIIRQRWQRLPSITPSMGLWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVD
PYAPSTVRASMGSVFQQQFIRTHDQALSQWLQQHQGYVIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTL
LKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDSSDFRGN
>Mature_279_residues
MVSRKSADCSASSVAATLHRIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVYSEKLLTAPLARKLVRRFRRS
GVETISVSPEQFRGISQTHRASGIGAIIRQRWQRLPSITPSMGLWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVD
PYAPSTVRASMGSVFQQQFIRTHDQALSQWLQQHQGYVIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTL
LKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDSSDFRGN

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=158, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790083, Length=156, Percent_Identity=28.2051282051282, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 31084; Mature: 31084

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSRKSADCSASSVAATLHRIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEE
SEKLLTAPLARKLVRRFRRSGVETISVSPEQFRGISQTHRASGIGAIIRQRWQRLPSITP
CCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
SMGLWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVDPYAPSTVRASMGSVFQQQFI
CHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RTHDQALSQWLQQHQGYVIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTL
HHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
LKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDSSDFRGN
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVSRKSADCSASSVAATLHRIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEE
SEKLLTAPLARKLVRRFRRSGVETISVSPEQFRGISQTHRASGIGAIIRQRWQRLPSITP
CCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
SMGLWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVDPYAPSTVRASMGSVFQQQFI
CHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RTHDQALSQWLQQHQGYVIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTL
HHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
LKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDSSDFRGN
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA