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The map label for this gene is ybiX [C]

Identifier: 158336839

GI number: 158336839

Start: 3766072

End: 3766731

Strand: Reverse

Name: ybiX [C]

Synonym: AM1_3707

Alternate gene names: 158336839

Gene position: 3766731-3766072 (Counterclockwise)

Preceding gene: 158336840

Following gene: 158336838

Centisome position: 57.92

GC content: 51.97

Gene sequence:

>660_bases
ATGATCTTAACGATTGACGAAGTGCTGACCGCCGAAGAACTCGCCGAGATGAAGGATGTGCTGGCAACGGCAGACTTTGT
CGATGGCAAAACCACCGCAGGTTGGCATGCCAAATTGGTCAAAAACAATACTCAACTCGCGGGCAAAGCAGCTTGTAGTA
TGGATCTGAAAGAGCGGGTCAAGTCCGCTCTCCTGCGTCATCCTTTGTTTAAGGTCGCGATTCAACCGCGGTCCATTCAT
ACACTGCTATTTAGTCGCTATCAAGAAGGCATGTCTTACGGAGACCATGTGGATAACGCCTTTATGGGTGGGGCGCGCTC
GGATGTGTCCTTTACTTTATTTCTCAATGCGCCCGAGGACTATACAGGGGGAGAACTCTGTGTGGAACTAGCCGATGGGG
TTCACACCTATAAATTGGCAGCTGGTTCTGCGATCGCATATCCGTCTTCCACCATTCACCGGGTCGAGACGGTCACCTCC
GGGACCCGCTTGGTGGCTGTGGGCTGGGTGCAGAGTCTCGTGCGGGATGTCCAACAACGCGAGCTGTTATTTGATTTAGA
TACAGCTCGGCGATCTCTGTTTGCCACCCACGGCAAAACCCCAGAATTTGACCTCATTTCTAAAAGCCATGCCAATCTGT
TGCGTCAGTGGGCAGAGTAA

Upstream 100 bases:

>100_bases
TAAGGACCAACCAAGAAACCACCGCTATTGAGAGTGTGATGGATGGCGCCCTAGATAACTTTATTGAGGCGTACTTGCGT
CAGGAGAATCAAATCGCTTC

Downstream 100 bases:

>100_bases
AGCCCACCAGGTTTGGCGGTGATCTGTCTTTTTTTGCACACACCAGAAAACTTATACCCCAGCTTATACAAGGTAAACAT
GAGCGCCATCACGTTCTCAG

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MILTIDEVLTAEELAEMKDVLATADFVDGKTTAGWHAKLVKNNTQLAGKAACSMDLKERVKSALLRHPLFKVAIQPRSIH
TLLFSRYQEGMSYGDHVDNAFMGGARSDVSFTLFLNAPEDYTGGELCVELADGVHTYKLAAGSAIAYPSSTIHRVETVTS
GTRLVAVGWVQSLVRDVQQRELLFDLDTARRSLFATHGKTPEFDLISKSHANLLRQWAE

Sequences:

>Translated_219_residues
MILTIDEVLTAEELAEMKDVLATADFVDGKTTAGWHAKLVKNNTQLAGKAACSMDLKERVKSALLRHPLFKVAIQPRSIH
TLLFSRYQEGMSYGDHVDNAFMGGARSDVSFTLFLNAPEDYTGGELCVELADGVHTYKLAAGSAIAYPSSTIHRVETVTS
GTRLVAVGWVQSLVRDVQQRELLFDLDTARRSLFATHGKTPEFDLISKSHANLLRQWAE
>Mature_219_residues
MILTIDEVLTAEELAEMKDVLATADFVDGKTTAGWHAKLVKNNTQLAGKAACSMDLKERVKSALLRHPLFKVAIQPRSIH
TLLFSRYQEGMSYGDHVDNAFMGGARSDVSFTLFLNAPEDYTGGELCVELADGVHTYKLAAGSAIAYPSSTIHRVETVTS
GTRLVAVGWVQSLVRDVQQRELLFDLDTARRSLFATHGKTPEFDLISKSHANLLRQWAE

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=224, Percent_Identity=39.7321428571429, Blast_Score=168, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3707_ACAM1 (B0C4F3)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001518013.1
- ProteinModelPortal:   B0C4F3
- GeneID:   5682513
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_3707
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- ProtClustDB:   PRK05467
- BioCyc:   AMAR329726:AM1_3707-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24153; Mature: 24153

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 163-163

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILTIDEVLTAEELAEMKDVLATADFVDGKTTAGWHAKLVKNNTQLAGKAACSMDLKERV
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
KSALLRHPLFKVAIQPRSIHTLLFSRYQEGMSYGDHVDNAFMGGARSDVSFTLFLNAPED
HHHHHHCCHHHEEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEEEECCCC
YTGGELCVELADGVHTYKLAAGSAIAYPSSTIHRVETVTSGTRLVAVGWVQSLVRDVQQR
CCCHHHHHHHHCCCEEEEEECCCEEECCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
ELLFDLDTARRSLFATHGKTPEFDLISKSHANLLRQWAE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILTIDEVLTAEELAEMKDVLATADFVDGKTTAGWHAKLVKNNTQLAGKAACSMDLKERV
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
KSALLRHPLFKVAIQPRSIHTLLFSRYQEGMSYGDHVDNAFMGGARSDVSFTLFLNAPED
HHHHHHCCHHHEEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEEEECCCC
YTGGELCVELADGVHTYKLAAGSAIAYPSSTIHRVETVTSGTRLVAVGWVQSLVRDVQQR
CCCHHHHHHHHCCCEEEEEECCCEEECCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
ELLFDLDTARRSLFATHGKTPEFDLISKSHANLLRQWAE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA