Click here to switch to the map view.

The map label for this gene is recA [H]

Identifier: 158336682

GI number: 158336682

Start: 3594206

End: 3595276

Strand: Direct

Name: recA [H]

Synonym: AM1_3550

Alternate gene names: 158336682

Gene position: 3594206-3595276 (Clockwise)

Preceding gene: 158336681

Following gene: 158336686

Centisome position: 55.26

GC content: 49.95

Gene sequence:

>1071_bases
ATGGCCACTGATAATTCCACTAACTCTGAGAAAGACAAAGCCCTAGGCGTCGTCCTGAATCAAATCGAACGCACCTTTGG
TAAAGGATCGATTATGCGTTTGGGTGATGCCACCCAGATGAAAGTGGAGACGATTTCGAGTGGTGCTTTAACCCTGGATT
TGGCTTTAGGGGGCGGCTTGCCCAAAGGTCGGGTGATTGAGATTTATGGCCCTGAAAGTTCCGGTAAAACAACCTTGGCG
TTGCATGCGATCGCAGAAGTGCAGCGATCTGGCGGTATTGCTGCCTTTGTGGATGCTGAACATGCCCTTGACCCCACCTA
TGCCTCAGCCCTAGGCGTCGATACGGAAAATCTGCTGGTGGCTCAACCTGATACCGGGGAATCGGCCTTAGAAATTGTCG
ATCAGCTGGTCCGCTCTACCGCCGTTGATATTGTGGTGATTGACTCCGTTGCGGCCCTCGTGCCTCGTGCTGAAATTGAG
GGGGATATGGGCGATTCCCATATGGGACTGCAGGCTCGCCTGATGAGTCAGGCCCTACGGAAAATTACTGGCAATATTGG
TCGCACCGGCTGCACCGTGGTGTTTCTCAACCAGCTACGCCAAAAAATTGGCGTGACCTATGGTAATCCGGAAGTGACTA
CGGGCGGGAATGCTCTCAAGTTCTATGCTTCAGTGCGCTTAGATATTCGTCGTATCCAGACCTTGAAAAAAGGCACTGAA
GAATTTGGGATTCGAGCTAAGGTCAAAGTGGTCAAAAATAAAGTGGCTCCTCCGTTTCGGATTGGAGAATTTGACATTAT
TTTTGGTCAAGGTATCTCTACCCTGGGTTGTCTGTTAGATATGGCGGAAGAAACCGACATTCTGGTCCGCAAAGGGGCTT
GGTATAGCTACAACGGCGAAAATATTGGCCAAGGTCGCGACAATACAGTTCGCTATATGAAGGATAATCCTGAGTTTACG
GAGTCCCTGACCCAGCAGGTGAGAGCCAAGCTAGATACGGGGGCGGAAGTGTCAGCCAATACCGTTGCCTCTACTAAAAA
AGGGAAAAAAGCAAAAGAGAAATCGGAGTAA

Upstream 100 bases:

>100_bases
TTCTTTGCAGAATTGCCAAGGGCAACGATGGTCATTCTGCACTTTGGTATGGTGCACAATAAAGTGATGCGTGCCCAATT
AAATTTCGTTTGAGGTGTTC

Downstream 100 bases:

>100_bases
GTCCGTTGATCTTGAGGAGAAGGTGATTGCAGAGGCAGTGAGTTGGATATTATCCGTCAATTCTCTGGGCACCCGGCTGA
CCATTCTTAATCTGATAGGA

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MATDNSTNSEKDKALGVVLNQIERTFGKGSIMRLGDATQMKVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLA
LHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLVAQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIE
GDMGDSHMGLQARLMSQALRKITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTE
EFGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGENIGQGRDNTVRYMKDNPEFT
ESLTQQVRAKLDTGAEVSANTVASTKKGKKAKEKSE

Sequences:

>Translated_356_residues
MATDNSTNSEKDKALGVVLNQIERTFGKGSIMRLGDATQMKVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLA
LHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLVAQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIE
GDMGDSHMGLQARLMSQALRKITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTE
EFGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGENIGQGRDNTVRYMKDNPEFT
ESLTQQVRAKLDTGAEVSANTVASTKKGKKAKEKSE
>Mature_355_residues
ATDNSTNSEKDKALGVVLNQIERTFGKGSIMRLGDATQMKVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLAL
HAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLVAQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIEG
DMGDSHMGLQARLMSQALRKITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTEE
FGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGENIGQGRDNTVRYMKDNPEFTE
SLTQQVRAKLDTGAEVSANTVASTKKGKKAKEKSE

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:
GO:0000166: Protein RecA 4
GO:0003677: Protein RecA 4
GO:0003684: Protein RecA 4
GO:0003697: Protein RecA 4
GO:0005524: Protein RecA 4
GO:0005737: Protein RecA 4
GO:0006259: Protein RecA 4
GO:0006281: Protein RecA 4
GO:0006310: Protein RecA 4
GO:0006974: Protein RecA 4
GO:0008094: Protein RecA 4
GO:0009432: Protein RecA 4
GO:0017111: Protein RecA 4

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=327, Percent_Identity=60.2446483180428, Blast_Score=416, Evalue=1e-117,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 38150; Mature: 38019

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00321 RECA_1 ; PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDNSTNSEKDKALGVVLNQIERTFGKGSIMRLGDATQMKVETISSGALTLDLALGGGL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCC
PKGRVIEIYGPESSGKTTLALHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLV
CCCCEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEECCHHCCCCHHHHHHCCCCCCEEE
AQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIEGDMGDSHMGLQARLMSQALR
ECCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHH
KITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTE
HHHCCCCCCHHHHHHHHHHHHHHCCEECCCCEECCCCEEEEEEEHHHHHHHHHHHHCCHH
EFGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGE
HHCCEEEEEEHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCEEEECCC
NIGQGRDNTVRYMKDNPEFTESLTQQVRAKLDTGAEVSANTVASTKKGKKAKEKSE
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ATDNSTNSEKDKALGVVLNQIERTFGKGSIMRLGDATQMKVETISSGALTLDLALGGGL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCC
PKGRVIEIYGPESSGKTTLALHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLV
CCCCEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEECCHHCCCCHHHHHHCCCCCCEEE
AQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIEGDMGDSHMGLQARLMSQALR
ECCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHH
KITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTE
HHHCCCCCCHHHHHHHHHHHHHHCCEECCCCEECCCCEEEEEEEHHHHHHHHHHHHCCHH
EFGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGE
HHCCEEEEEEHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCEEEECCC
NIGQGRDNTVRYMKDNPEFTESLTQQVRAKLDTGAEVSANTVASTKKGKKAKEKSE
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA